| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3389 |
|---|
| Symbol | |
|---|
| ID | 1222253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3654061 |
|---|
| End bp | 3654609 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637239806 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_521508 |
|---|
| Protein GI | 17548106 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0147102 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGCG GCGAGCTGCC GCGCGCCTCC ATCAGCGACA CCATCCCGAT GACGATGGCA
TCGATCGACG CCGGCAGCGT CCGCTTCACC GCCCGCGCCG ACAAGCGCCA CCTGAACCCG
CTGGGCGGCG TGCACGGCGG CTTTGCGGCG ACAGTGCTGG ACTCAGTCAC CGGCTGCGCG
ATCCACTCGA TACTTGAAGC CGGCGTGGGC TACGGCACGG TCGACCTCAG CGTGAAGAGG
GTCAAGGCGG TGCCGGAGGA CACCCCGCTG GTGGCCGAAG GGCGCGTGCT GCACGTGCCG
TGCGCAATCG GCTCACAGCG TGCGGACCTC ATGCTGGCGC CACCGCGGCT CGGCCGCGAT
CGTCGGTGTC CGGCGGGGCA TGCGCCGGCC GGAGCCGCTC GCGCCGCCTG CGCCCCCCAA
GGCAGGCTGA CGCCGATGCG CCGGCCGCTC AATGCAGCGC CGGCAGCCCG GCGGTGCGGA
CGTACTGGAA CAGATCGGTC TCGCGCGCCA GGCCGAGCTT GCGCAGCGCC ATGGTCTTCT
GCGTGCTGA
|
|---|
| Protein sequence | MARGELPRAS ISDTIPMTMA SIDAGSVRFT ARADKRHLNP LGGVHGGFAA TVLDSVTGCA
IHSILEAGVG YGTVDLSVKR VKAVPEDTPL VAEGRVLHVP CAIGSQRADL MLAPPRLGRD
RRCPAGHAPA GAARAACAPQ GRLTPMRRPL NAAPAARRCG RTGTDRSRAP GRACAAPWSS
AC
|
|---|
| |