| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3363 |
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| Symbol | cpdB |
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| ID | 1222227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 3621887 |
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| End bp | 3623932 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637239780 |
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| Product | 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor transmembrane protein |
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| Protein accession | NP_521482 |
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| Protein GI | 17548080 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGTCC GACCGTTGTC GTCGGCGGCA TTGCCGCTGG CCGCCTGGTT GTCGCTGTCG
CTGACCGCCT GCGGCGGCAG CGACGATCCG AGCGCCGCCT CCGCCGCGCC CACCGGCACC
AAGGCAACGC TCGCCGTGCT GGAGACCACC GACCTGCACA CCAACGTGCT GTCGTACGAC
TACTTCAAGC TGGCCGCCGA CAGCTCGCTC GGCTTCGAGC GCGTGTCGAC GCTGATCGCG
CAGGCGCGCG CGCAGTTTCC CAACACGCTG CTGCTCGACA ACGGCGACAC CATCCAGGGC
ACCGCGCTGT CCGACTACCA GGCCCTGGTG AACCCCATCG CCTGCGGCCA GGCCCTGGCC
ATCTACAAGG TGATGAACGC AGCCGGGTAC GACGGCGGCA GCATCGGCAA CCACGAGTTC
AACTACGGCC TGCCGTACCT GTCGCAGGTC ACCGGCAACA CCTTCAACGT GGCCGGCATG
GCCGATCCTG CGCAGCAGAC CCGGTGCGCG GGGCCGAGCT TTCCGCAGGT GCTGGCCAAC
GTGATGAGCG CCAAGACCAG CGCGCCGCTG TTCCAGCCCT ACACCCTCCT GACCAAGACC
GTGACGGCGA CCGCGCCGGA CGGCAGCACC GTCAGCGCGC CGCTCAAGGT CGGCATCATC
GGCTTCACGC CGCCGGCCAT CACCAGCTGG GACAAGCGCT GGCTCGACGG CAAGGTCTAC
ACCGTCGGCA TCAAGGAGGC CGCGCAGCAG TACGTCCCGC AGATGCGCGC GCAGGGCGCC
GACGTGGTGG TCGCCATCTC GCACGGCGGG CTGGACAACT CGACGTACTC GCCGACGATG
GAGAACGGCA GCTGGTGGCT CTCCACCGTG CCGGGCATCG ACGCCATGCT GATCGGCCAC
TCGCACCAGC TGTTCCCGGA TGCCAAGAGC ACGGTCGGCC AGTTCAACCT GCCGGGGGTC
GACAAGGTCA ATGGCACGGT CAACGGCGTG CCGACGGTGA TGGCCAACTA CTGGGGCAAG
CACCTGGGCG TGATCCAGCT CGGGCTGGTG TACGACGGCA CGCACTGGTC GGTCGACAAG
ACCCAGACCA CGGTGGAAGC GCGCCCGATC CAGAACGCCG ACAAGACCTA CGTCGCCGCC
GACCCGGCCG TGTCCGCCGC GATCGCCGCC GAGCACCAGG CGACCATCGA CTACGTGAAG
ACGCCGATCG GCAGCACCGA CTTCCACATG AGCACGTTCT TCGCCGATGT GGGCGACCCG
GGCGCGATCG AGATCGTCAA CCAGGCGCAG GCGGATTCTG TGTCGGCCTA CATCCAGGCC
AACCTGCCGC AATACGCATC GCTGCCGGTG CTGTCGGTCA GCGCGCCGTT CAAGAGCGGC
TTCGGCGGCG GCACCGACTA CACCGACGTC GCGGCCGGCT CGCTGGCCAT CAACAACGCG
GCGGACCTGT ACCTGTATCC GAACACGATC TACGCGGTCC TGGTCAGCGG CACCGACATC
AAGAACTGGC TGGAGACGGC AGCCAAGCGC TTCAACACCA TCGACCCGAC CAGCGCGACG
GTGCAGAAGC TCGTCGGCAC CTTCCCCGGC TACAACTTCG ACATGTTCAC CACGGCCGAT
CTCACCTACG AGATCGACGT GACGCAGGCA GTGGGCAGCC GCATCAAGAA CCTGCAGTAC
AAGGGCGCGG CCATCGACCC GGCCGGCCAG TTCATCGTCG CCACCAACAA CTACCGCGCC
AGCGGCGGCG GCAACTTCCC GGGCCTCGAC GGCAGCAAGA CCGTCTATGC CTCGCCGGAC
GCCAACCGCG ACGTGCTGAT CCGCTACATC AAGAAGCTCG GCACCGTCAC GCGCGCGGCC
AACGGCTCGC AGCGCAGCTG GCGCTTCACC AGGCTGGCGA GTTCGGTGGC CCAGGTGCAG
TTCGCCTCCG CGCCCAACCG CCTGGCCGAC GCTACGGCCG CGGGCCTGGC CGGCATCACG
CAAGTCGCGG CGGATGACGG CAGCGGCAAG GGCCTGGCGA CATACCAGAT CGACCTGACG
CAATAA
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| Protein sequence | MQVRPLSSAA LPLAAWLSLS LTACGGSDDP SAASAAPTGT KATLAVLETT DLHTNVLSYD
YFKLAADSSL GFERVSTLIA QARAQFPNTL LLDNGDTIQG TALSDYQALV NPIACGQALA
IYKVMNAAGY DGGSIGNHEF NYGLPYLSQV TGNTFNVAGM ADPAQQTRCA GPSFPQVLAN
VMSAKTSAPL FQPYTLLTKT VTATAPDGST VSAPLKVGII GFTPPAITSW DKRWLDGKVY
TVGIKEAAQQ YVPQMRAQGA DVVVAISHGG LDNSTYSPTM ENGSWWLSTV PGIDAMLIGH
SHQLFPDAKS TVGQFNLPGV DKVNGTVNGV PTVMANYWGK HLGVIQLGLV YDGTHWSVDK
TQTTVEARPI QNADKTYVAA DPAVSAAIAA EHQATIDYVK TPIGSTDFHM STFFADVGDP
GAIEIVNQAQ ADSVSAYIQA NLPQYASLPV LSVSAPFKSG FGGGTDYTDV AAGSLAINNA
ADLYLYPNTI YAVLVSGTDI KNWLETAAKR FNTIDPTSAT VQKLVGTFPG YNFDMFTTAD
LTYEIDVTQA VGSRIKNLQY KGAAIDPAGQ FIVATNNYRA SGGGNFPGLD GSKTVYASPD
ANRDVLIRYI KKLGTVTRAA NGSQRSWRFT RLASSVAQVQ FASAPNRLAD ATAAGLAGIT
QVAADDGSGK GLATYQIDLT Q
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