| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3340 |
|---|
| Symbol | |
|---|
| ID | 1222204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3600411 |
|---|
| End bp | 3601397 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637239757 |
|---|
| Product | transmembrane ABC transporter protein |
|---|
| Protein accession | NP_521459 |
|---|
| Protein GI | 17548057 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACT CGTCCTCCTT CAAGTTCATC CTGTACGGCC TGCTGCTGGC GGCGCTGATC
GTCGCGCCGC TGGCGGGGGC GTACCCGGTG TTCGTCGCCA AGCTGCTGTG CTTCGCGCTG
TTCGCTTCGG CCTTCAACCT GCTGCTCGGC TATACCGGGC TGCTGTCGTT CGGGCACGCC
GCCTTCTTCG GCGGCGCGGG CTACGTGGCC GGCTACCTGA TGCGGGACCT GAACCTGACG
CCCGAGCTGG GCCTGATCGC CGGCACCGCG GCGGGGGCGC TGATCGGCCT GGTGGTGGGG
CTGCTGGCGA TCCGCCGCCA GGGCATCTAT TTCGCGATGA TCACCCTGGC GCTGGCGCAG
ATGTTCTATT TCTTCTGCCT GCAGGCGCCG TTCACCGGCG GCGAGGACGG CCTGCAGGGC
GTGCCGCGCG GCAAGCTGCT CGGCATGCTG GACCTGTCGT CCGACCTGAC GCTGTACTAC
TTCGTCCTGG CCGTGGTGGT GGTGGCCTTT CTGCTGATCG TGCGGACCAT CCATTCGCCG
TTCGGCCAGA TCCTCAAGGC CATCAAGGAA AACGAGCCGC GCGCGATCTC GCTGGGCTAT
GATACCGACC GCTTCAAGCT GCTGGCCTTC GTGCTGTCGG CGGCACTGTC GGGACTGGCC
GGCGCGCTCA AGACGCTGGT GCTGGGCTTC GAGACGCTGA CCGACGTGCA CTGGGCAATG
TCGGGCTCGG TGATCCTGAT GACGCTGGTG GGCGGCCTTG GCATCCTGTC CGGCCCGATC
CTGGGCGCGG CGCTGGTGAT CGCGCTGGAG AACAAGCTGG GCGATCTCGG CGCCTTCCTG
GCCGGCGCGA CCGGCATGGA CGGCTTCAAC GTGCTGGGCG AATCGGTGAC CACGGTCACC
GGGGCGATCT TCGTGATCTG CGTGCTGACC TTCCGCCGTG GCATCATGGG CGAGATCGCC
GCCAGGGTGC CCTGGCTGAA GCGTTGA
|
|---|
| Protein sequence | MNHSSSFKFI LYGLLLAALI VAPLAGAYPV FVAKLLCFAL FASAFNLLLG YTGLLSFGHA
AFFGGAGYVA GYLMRDLNLT PELGLIAGTA AGALIGLVVG LLAIRRQGIY FAMITLALAQ
MFYFFCLQAP FTGGEDGLQG VPRGKLLGML DLSSDLTLYY FVLAVVVVAF LLIVRTIHSP
FGQILKAIKE NEPRAISLGY DTDRFKLLAF VLSAALSGLA GALKTLVLGF ETLTDVHWAM
SGSVILMTLV GGLGILSGPI LGAALVIALE NKLGDLGAFL AGATGMDGFN VLGESVTTVT
GAIFVICVLT FRRGIMGEIA ARVPWLKR
|
|---|
| |