Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3329 |
Symbol | |
ID | 1222193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3592071 |
End bp | 3593219 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637239746 |
Product | amino-acid-binding periplasmic (PBP) ABC transporter protein |
Protein accession | NP_521448 |
Protein GI | 17548046 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.279448 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.702706 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGGTTT CGCGCGCAAC CCGCATCGCA CTGGCCGCGA CGGCATTCCT GGCAAGCACG GCGTTCGCCC AGGTGAAGGT CGGCGTCACG GTGTCGGCCA CCGGGCCGGG GGCATCGCTG GGGATTCCGG AGAAGAACAC GGTGTCGCTG CTGCCCAAGG AGATCGCCGG CAAGAAGATC GAATACATCG TGCTGGACGA TGCCTCCGAC ACCACCACTG CCGTCAAGAA CACGCGCAAG CTGATCACCG AAGACAAGGT CGATCTCGTG ATCGGCTCCA CCATCACGCC GACCTCGCTG GCGATGGTGG ACGTGGCGGC CGAGAGCGAG ACGCCGATGA TCTCGCTGGC GGCGTCCGCG CGCATCGTCG AGCCGATGGA CGCCAAGCGC GTGTGGGTCT TCAAGACCCC GCAGAACGAT TCGCACATGG CGACCGCTAT TGCCGAGCAC ATGGCCAACC ATGGCGTGAA GACGGTCGCA CTGATCGGCT TTGCCGATGC CTACGGCGAC TCGTGGGCAC AGGAGTTCGA CAAGGTGGCG ACGTTGCGCA AGCTGCAGCT CGTCGCCAAC GAGCGCTTCG CGCGCACCGA TACCTCGGTG ACGGGGCAGG TGCTGAAGAT CATGGCCGCC AAGCCGGACG CGGTGCTGAT CGCCGGCTCC GGCACGCCGG CCGCGTTGCC CCAGCGTGCG CTCAAGGAGC GCGGCTATAA GGGCAAGCTG TACCAGACCC ACGGCGTGGC CAATGCCGAC TTCCTGCGCG TGTGCGCCAA GGACTGCGAA GGCACCTTCC TGCCCGCCGG CCCGATCCTC GTCGCCGAGC AGCTGCCCGA CAGCAACCCG GTCAAGAAGC CGGCGCTGGC CTACAAGGTC GCGTACGAGA AAGCGTTCGG CGGCCAGGTC TCGACGTTTG GCGGCCACAT GTGGGATGCC GGTCTGCTGC TGGCGAACGC GATGCCCGCG GCGCTCAAGA AAGGGCAGCC CGGTACGCTG GCCTTCCGCA AGGGCCTGCG TGACGCGCTG GAGACGACGA CCAATCTGGC CATCTCGCAT GGCGTGATGA ACATGAATGC CAAGGATCAC CTCGGCCTCG ACCAGCGGTC GCGCGTGATG GTGGAGATCC AGGACGGCAA GTGGAAGCTG CAGAACTGA
|
Protein sequence | MKVSRATRIA LAATAFLAST AFAQVKVGVT VSATGPGASL GIPEKNTVSL LPKEIAGKKI EYIVLDDASD TTTAVKNTRK LITEDKVDLV IGSTITPTSL AMVDVAAESE TPMISLAASA RIVEPMDAKR VWVFKTPQND SHMATAIAEH MANHGVKTVA LIGFADAYGD SWAQEFDKVA TLRKLQLVAN ERFARTDTSV TGQVLKIMAA KPDAVLIAGS GTPAALPQRA LKERGYKGKL YQTHGVANAD FLRVCAKDCE GTFLPAGPIL VAEQLPDSNP VKKPALAYKV AYEKAFGGQV STFGGHMWDA GLLLANAMPA ALKKGQPGTL AFRKGLRDAL ETTTNLAISH GVMNMNAKDH LGLDQRSRVM VEIQDGKWKL QN
|
| |