| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3317 |
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| Symbol | atpD |
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| ID | 1222181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 3579965 |
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| End bp | 3581368 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637239734 |
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| Product | F0F1 ATP synthase subunit beta |
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| Protein accession | NP_521436 |
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| Protein GI | 17548034 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.156126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0243325 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATCG GAACGATTGT GCAGTGCATC GGCGCCGTGG TGGACATCCA GTTCCCGCGC
GACGCGATGC CCAAGGTCTA CGACGCGCTC GTGCTGCAGG ACAGCGGCGA AGCGTCGTTC
GCCGAGAAGG GCCTGAGCTT CGAAGTGCAA CAACAGCTGG GCGACGGCGT GGTGCGTACC
ATTGCGCTGG GTTCGTCGGA CGGCCTGCGC CGCGGCATGC CGGTGTCGAA CACTGGCGCG
CCGATCTCGG TGCCCGTCGG CCACGGCACG CTGGGCCGCA TCATGGACGT GCTGGGTCGC
CCGATCGACG AAGCCGGTCC GATCGCCGCC GATGAAAAGC GCGCGATTCA CCAGAAGGCC
CCGAAGTTCG ACGAACTGTC GCCGTCGGTG GACCTGCTGG AAACCGGCAT CAAGGTGATC
GACCTGGTTT GCCCGTTCGC CAAGGGCGGC AAGGTGGGTC TGTTCGGTGG CGCCGGCGTC
GGCAAGACCG TGAACATGAT GGAGCTGATC AACAACATCG CCAAGCAGCA CTCGGGCTTG
TCGGTGTTTG CTGGCGTGGG CGAGCGTACC CGTGAGGGCA ACGACTTCTA CCACGAAATG
AAGGACTCCA ACGTGCTCGA CAAGGTGGCC ATGGTGTTCG GCCAGATGAA CGAGCCGCCG
GGCAACCGTC TGCGCGTGGC GCTGACCGGC CTGACCATGG CCGAGCGCTT CCGTGACGAA
GGCCGCGACA TCCTGTTCTT CGTCGACAAC ATCTACCGCT ACACGCTGGC CGGTACCGAA
GTGTCGGCAC TGCTGGGCCG GATGCCTTCC GCCGTGGGCT ATCAGCCGAC GCTGGCTGAA
GAAATGGGCA AGCTGCAGGA GCGCATCACG TCGACCAAGA CCGGTTCGAT CACGTCGATC
CAGGCCGTGT ACGTGCCTGC GGATGACTTG ACCGATCCGT CGCCCGCTAC GACCTTCCTG
CACCTGGACT CGACCGTCGT GCTGTCGCGT GACATCGCTG CGCTGGGTAT CTACCCCGCC
GTCGATCCGC TCGACTCGAC CTCGCGTCAG CTGGATCCGC AAATCGTCGG TACGGAACAC
TACGAAGTGG CCCGCCGCGT GCAGCAGACC CTGCAGCGCT ACAAGGAACT GCGCGACATC
ATCGCGATTC TGGGCATGGA CGAACTGTCG CCGGAAGACA AGCTGGCCGT GGGCCGCGCC
CGTAAGATCC AGCGTTTCCT GTCGCAGCCG TTCCACGTGG CCGAAGTGTT CACGGGTTCG
CCGGGCAAGT ACGTGCCGCT GAAGGAAACC ATCCGCGGCT TCAAGATGCT GGTGGATGGC
GAGTGCGATC ACCTGCCGGA GCAGGCGTTC TACATGGTCG GCTCGATCGA CGAGGCCTTC
GAGAAGGCCA AGAAGCTCCA GTAA
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| Protein sequence | MSIGTIVQCI GAVVDIQFPR DAMPKVYDAL VLQDSGEASF AEKGLSFEVQ QQLGDGVVRT
IALGSSDGLR RGMPVSNTGA PISVPVGHGT LGRIMDVLGR PIDEAGPIAA DEKRAIHQKA
PKFDELSPSV DLLETGIKVI DLVCPFAKGG KVGLFGGAGV GKTVNMMELI NNIAKQHSGL
SVFAGVGERT REGNDFYHEM KDSNVLDKVA MVFGQMNEPP GNRLRVALTG LTMAERFRDE
GRDILFFVDN IYRYTLAGTE VSALLGRMPS AVGYQPTLAE EMGKLQERIT STKTGSITSI
QAVYVPADDL TDPSPATTFL HLDSTVVLSR DIAALGIYPA VDPLDSTSRQ LDPQIVGTEH
YEVARRVQQT LQRYKELRDI IAILGMDELS PEDKLAVGRA RKIQRFLSQP FHVAEVFTGS
PGKYVPLKET IRGFKMLVDG ECDHLPEQAF YMVGSIDEAF EKAKKLQ
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