Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3303 |
Symbol | hemE |
ID | 1222167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3565798 |
End bp | 3566892 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637239720 |
Product | uroporphyrinogen decarboxylase |
Protein accession | NP_521422 |
Protein GI | 17548020 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0163615 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCAC CGCTCGCCAA CGACACCTTC CTGCGTGCCC TGCGCCGCCA GCCCACCGAA TACACGCCGC TGTGGCTGAT GCGCCAGGCG GGCCGCTACC TGCCCGAGTA CAACGCCACG CGCGCGCGCG CCGGCAGCTT CCTGGGCCTG GCCAAGTCGC CGGCCTATGC CACCGAGGTG ACGCTGCAGC CGCTGGACCG CTATCCGCTG GATGCCGCCA TCCTGTTCTC CGACATCCTG ACCGTGCCCG ATGCGATGGG CCTGGGGCTG TCGTTCGAGC AGGGCGAAGG TCCGCGCTTC GCGCGACCGG TGCGCTCCGA GGCGGACGTG GCCGCGCTGT CGGTGCCCGA CATGGCCTCG TTGCAATACG TCTTCGATGC GGTGTCGGAA ATCCGCCGCG CGCTGGTGCA GGACGGCCGC CAGCGCGTGC CGCTGATCGG CTTCTCGGGC AGCCCGTGGA CGCTGGCCTG CTACATGGTC GAAGGCGGCG GCTCGGACGA CTTCCGCACC GTCAAGTCGA TGCTCTACGC GCGCCCGGAC CTGATGCACC GCATCCTGGA AATCAACGCG GCCGCCGTGA TCGACTACCT GAACGCGCAG ATCGACGCTG GCGCCCAGGC CGTGATGGTG TTCGACACCT GGGGCGGCGC GCTGGCCGAC GGCATCTACC AGACGTTTTC GCTGGCCTAT ATGGCGCGCG TGGTGGAAGG CCTGCGCGCC GGCGCGGACG GCCAGCGTGT GCCGGTGATC CTGTTCACCA AGGGCGGCGG GCTGTGGCTC GAATCGATGG CCCAGACCGG CGCCGATGCG CTGGGCGTGG ACTGGACGGT CAACCTGCAG CTGGCGCGCG TGCGCACCGG CGGCCGGGTG GCGCTGCAGG GCAACCTCGA CCCGACCGTG CTGTTCGCCG AGCCGGATGC CATCCGCGCG CAGGTGCGCC GGGTGCTGGA GGACTATGCC GCCGGCGGCG ACAGCGATGG CCATGTGTTC AACCTCGGTC ACGGCATCTC GCAGTTCACG CCGCCGGAGT CGGTGGCGGT GCTGGTGGAC GAAGTGCACA CCTTCAGTCG CGCGCTGCGG ACCCGCTTGC CGTAG
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Protein sequence | MSAPLANDTF LRALRRQPTE YTPLWLMRQA GRYLPEYNAT RARAGSFLGL AKSPAYATEV TLQPLDRYPL DAAILFSDIL TVPDAMGLGL SFEQGEGPRF ARPVRSEADV AALSVPDMAS LQYVFDAVSE IRRALVQDGR QRVPLIGFSG SPWTLACYMV EGGGSDDFRT VKSMLYARPD LMHRILEINA AAVIDYLNAQ IDAGAQAVMV FDTWGGALAD GIYQTFSLAY MARVVEGLRA GADGQRVPVI LFTKGGGLWL ESMAQTGADA LGVDWTVNLQ LARVRTGGRV ALQGNLDPTV LFAEPDAIRA QVRRVLEDYA AGGDSDGHVF NLGHGISQFT PPESVAVLVD EVHTFSRALR TRLP
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