Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3301 |
Symbol | putA |
ID | 1222165 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3558770 |
End bp | 3562747 |
Gene Length | 3978 bp |
Protein Length | 1325 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637239718 |
Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | NP_521420 |
Protein GI | 17548018 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.584307 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTACGA CCACCCTCGG GGTCAAGCTG GACGATGCTT CGCGCGAACG CCTCAAGCGC GCAGCCCAGT CCATTGACCG CACACCGCAC TGGCTGATCA AGCAGGCGAT CTTCACCTAT CTGGACCAAG TGGAGCGGGG GCAGCTGCCG AATGATGCGG GCGGTCCGGC GGCGGATGGC CTCCCGTCCG CCGCCGCAGC CGTCGCGGAC ATGGCCGATG CCGATGGCAC CGAGGCCGTG GTGCAACCCT TCCTCGAATT CGCGCAGAGC GTGCAGCCGC AGTCGGTGCT GCGCGCCGCC ATCACGGCCG CCTACCGCCG GCCGGAAACC GAGGCGATTC CGATGCTGCT GGAGCAGGCC CGCCTGCCGG GCGCGCTGGC CTCCGAGGCC AAGCAGCTCG CCCGCGACCT TGCCGGCAAG CTCCGTACGC AAAAGGTCGG CACCGGCCGC GAAGGTCTGG TGCAAGGTCT GATTCAAGAG TTCTCCCTGT CGAGCCAGGA GGGCGTGGCG CTGATGTGCC TGGCCGAGGC ACTGCTGCGC ATTCCCGACA AGGCCACGCG CGATGCGCTG ATCCGCGACA AGATCAGCAG CGGCAACTGG CAGTCGCATC TGGGCCAGAG CCCGTCGTTG TTCGTCAACG CCGCCACCTG GGGCCTGCTG CTGACGGGCA AGCTGGTGGC CACGCACAAC GAGGCCGGAC TGTCGAAGGC GCTCACGCGC ATCATCGGCA AGCGCGGCGA GCCGCTGATC CGCAAGGGCG TCGACATGGC GATGCGCCTG ATGGGCGAGC AGTTCGTCAC CGGCGAGACC ATTTCCGAAG CGCTGGCCAA CGCCCGCAAG TACGAGGCCG AAGGCTTCCG CTACTCCTAC GACATGCTCG GCGAAGCCGC CATGACGGAA GAGGATGCCC AGCGCTACCT CGCGTCGTAC GAGCAGGCCA TCCGCGCGAT CGGCCAGGCT TCGGGCGGGC GCGGCATCTA TGAGGGGCCG GGCATCTCGA TCAAGCTGTC GGCGCTGCAC CCGCGCTACA GCCGCGCCCA GTACGACCGC GCCATCAATG AGCTGTATCC GCGCGTGAAG GGCCTGGCCA TGCTGGCCCG CGAGTACGAC ATCGGCATCA ACATCGATGC GGAAGAAGCC GACCGCCTGG AGCTGTCGCT CGATCTGCTC GAGCGCTTGT GCTTCGCGCC CGAGCTGGCC GGCTGGAACG GCATCGGCTT CGTGGTGCAG GGCTACCAGA AGCGCTGCCC GTTCGTGCTC GACTACCTCA TCGACCTGGC GCGCCGCAGC AAGCACCGCC TGATGATTCG CCTGGTCAAG GGCGCCTACT GGGACAGCGA GATCAAGCGC GCCCAGGTCG ACGGCCTGGA GGGCTATCCG GTCTATACGC GCAAGGTCTA CACCGACGTG TCGTACCTGG CCTGCGCGCG CAAGCTGCTG GCCGCGCCCG ATGTCGTGTT TCCGCAGTTC GCCACGCACA ACGCCCATAC GCTGGCGGCC ATCTATCACA TGGCCGGGCA GAACTATTAC CCCGGCCAGT ACGAATTCCA GTGCCTGCAC GGCATGGGCG AGCCGCTGTA CGAGCAGGTG GTCGGCAACA AGCCGGGCAA GCTCAACCGG CCGTGCCGCA TCTACGCGCC GGTCGGCACG CACGAGACGC TGCTGGCCTA CCTGGTGCGC CGCCTGCTGG AGAACGGCGC CAACACCTCG TTCGTCAACC GCATCGCGGA CGAGTCGATT CCGCTGGACG AACTCGTCGC CGATCCGGTG GCGGTGGTGG AGAACATGCA CGCCGAGGAA GGCGCGCTCG GCCTGCCGCA TCCGAAAATT CCGTTGCCGC GCCATCTCTA TGGTGATGTG CGTGCCAATT CGGCAGGGAT CGACCTGGCG AACGAGCATC GGCTGGCGTC GTTGTCGTCT GCGCTGCTGG CCGGTACCAG CTCGGTCTGG GCCGCTGAAC CGACCATCGG CGATGCGCCA TACACCGGTG GCACGCCGCA ACCGGTGCGC AACCCGTCGG ACCTGCGTGA CGTGGTCGGC CACGTGACCG AAGCCACTGA AGCCGACGTC GATGCCGCGC TGTCGGCCGC CGCCGCCGCC GCCCCGATCT GGCAAGCCAC GCTGCCCGAA GCGCGTGCCG CGCTGCTCGA TCGCGCCGCC GACCTGATGG AAGGCGAGAT GCAGCACCTG ATGGGCCTGA TCATCCGCGA GGCGGGCAAG ACGCTGTCCA ACGCGATCGC CGAAGTGCGC GAGGCGGTGG ACTTCCTGCG CTACTACGCG GCGCAGGTGC GTGGCGGGTT CTCCAACGAC ACGCACCGCC CGCTGGGCCC GGTGGTCTGC ATCAGCCCGT GGAACTTCCC GCTGGCGATC TTCACCGGCC AGGTGAGCGC GGCGCTGGCC GCCGGCAACC CGGTGCTGGC CAAGCCCGCC GAGCAGACCC CGCTGATCGC CGCACAGGCC GTGCGCATCC TGCGCGAAGC CGGCGTGCCG GCCGGCGCGG TGCAGCTGCT GCCGGGCCGC GGCGAGACCG TCGGGGCCGC ACTGGTGAAG GATGCGCGCA CCAAGGGCGT GATGTTCACC GGCTCGACCG AGGTGGCGCG CATCCTGCAG CGCACGCTGG CCGGCCGCCT GGATGCCAAC GGTGCACCGA TCCCGCTGAT CGCCGAGACC GGCGGCCAGA ACGCGATGAT CGTCGATTCG TCGGCGCTGG CCGAGCAGGT GGTGGCCGAT GTGCTGTCGT CCGCCTTCGA TTCCGCCGGG CAGCGCTGCT CGGCCCTGCG CGTGCTGTGC CTGCAGGACG ACGTGGCCGA CCGCGTGCTG GCGATGCTCA AGGGCGGCAT GGCCGAGCTG GCGATGGGCA ATCCCGATCG CCTGTCCACC GACGTCGGCC CGGTGATCGA CGCCGAGGCG CGCGACAACA TCGTCGGCCA TATCGAAGGG ATGCGCGCCA AGGGCCGGCG CGTGCACCAG GCGCCCGCGC CGGCTGCCTG CGCCCACGGC ACCTTCGTGC CGCCGACGGT GATCGAACTC GACAGCCTGT CGGACCTGAC GCGCGAGATC TTCGGGCCGG TGCTGCACGT GGTCCGCTGG AAGCGCACAG CCGACAACGC CGGCCTCACC CGGCTCATCG AGCAGATCAA CGGCACGGGC TACGGCCTGA CGCTGGGCAT CCACACCCGC ATCGACGAGA CCATTGCGCA CATCGTCGAG CGGGCGCGGG TGGGCAACCT GTACGTGAAC CGCAATATCG TCGGCGCGGT GGTCGGCGTG CAGCCGTTCG GCGGCGAGGG CCTGTCGGGC ACCGGCCCGA AGGCGGGCGG CTCGCTGTAT CTGCTGCGCC TGCTGTCGAC CTGCCCGCAG GACGCGATGC GCACGGCGCT GGAGTTGACC GCGGGCGCCG GCACCGACGT CGAGACCGAG GAGCGCCGCG CGCTGCTGGC GCCGTTCGAC GCGCTGCGTG ACTGGGCGCG CCGGCAGTCG CCCGGGCTGG CCGCGCTGTG CGACCGCCTG GCGGCGGCCA CGGCCACCGG CGCGGTTCTG ACGCTGCCGG GCCCGACCGG CGAGCGCAAC ACCTATATGC TGCTGCCGCG CGACGCGGTG CTGTGCGTGG CGGCCGATCC GGCCGACTGG CTGCGTCAGC TGGCGGCCGT GCTGGCGGTG GGCAGCGAGG CGGTCGTGCA GGAAAACCCT GCCATCGCCG AGGTGCTGCG TACGCTGCCG TCGGCAGTAC AATCGCGCGT CCGGACGGTG GCGTCGCTGG AAGACGCGGC GTTCGACGCG GTGCTGCACC ACGGCGATTC GGATCACCTG CGCGCCCTGT GCGAAGGGCT GGCGCGCCGT GCCGGTCCGA TCGTCGGCGT GCAGGGCTTG CCGCACGGCG GACAGGGGCT GGCGCTGGAG CGCCTGCTGA TCGAGCGTTC GCTGTCGGTC AACACGGCCG CGGCGGGTGG CAACGCCAGC CTGATGACCA TCGGCTGA
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Protein sequence | MATTTLGVKL DDASRERLKR AAQSIDRTPH WLIKQAIFTY LDQVERGQLP NDAGGPAADG LPSAAAAVAD MADADGTEAV VQPFLEFAQS VQPQSVLRAA ITAAYRRPET EAIPMLLEQA RLPGALASEA KQLARDLAGK LRTQKVGTGR EGLVQGLIQE FSLSSQEGVA LMCLAEALLR IPDKATRDAL IRDKISSGNW QSHLGQSPSL FVNAATWGLL LTGKLVATHN EAGLSKALTR IIGKRGEPLI RKGVDMAMRL MGEQFVTGET ISEALANARK YEAEGFRYSY DMLGEAAMTE EDAQRYLASY EQAIRAIGQA SGGRGIYEGP GISIKLSALH PRYSRAQYDR AINELYPRVK GLAMLAREYD IGINIDAEEA DRLELSLDLL ERLCFAPELA GWNGIGFVVQ GYQKRCPFVL DYLIDLARRS KHRLMIRLVK GAYWDSEIKR AQVDGLEGYP VYTRKVYTDV SYLACARKLL AAPDVVFPQF ATHNAHTLAA IYHMAGQNYY PGQYEFQCLH GMGEPLYEQV VGNKPGKLNR PCRIYAPVGT HETLLAYLVR RLLENGANTS FVNRIADESI PLDELVADPV AVVENMHAEE GALGLPHPKI PLPRHLYGDV RANSAGIDLA NEHRLASLSS ALLAGTSSVW AAEPTIGDAP YTGGTPQPVR NPSDLRDVVG HVTEATEADV DAALSAAAAA APIWQATLPE ARAALLDRAA DLMEGEMQHL MGLIIREAGK TLSNAIAEVR EAVDFLRYYA AQVRGGFSND THRPLGPVVC ISPWNFPLAI FTGQVSAALA AGNPVLAKPA EQTPLIAAQA VRILREAGVP AGAVQLLPGR GETVGAALVK DARTKGVMFT GSTEVARILQ RTLAGRLDAN GAPIPLIAET GGQNAMIVDS SALAEQVVAD VLSSAFDSAG QRCSALRVLC LQDDVADRVL AMLKGGMAEL AMGNPDRLST DVGPVIDAEA RDNIVGHIEG MRAKGRRVHQ APAPAACAHG TFVPPTVIEL DSLSDLTREI FGPVLHVVRW KRTADNAGLT RLIEQINGTG YGLTLGIHTR IDETIAHIVE RARVGNLYVN RNIVGAVVGV QPFGGEGLSG TGPKAGGSLY LLRLLSTCPQ DAMRTALELT AGAGTDVETE ERRALLAPFD ALRDWARRQS PGLAALCDRL AAATATGAVL TLPGPTGERN TYMLLPRDAV LCVAADPADW LRQLAAVLAV GSEAVVQENP AIAEVLRTLP SAVQSRVRTV ASLEDAAFDA VLHHGDSDHL RALCEGLARR AGPIVGVQGL PHGGQGLALE RLLIERSLSV NTAAAGGNAS LMTIG
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