Gene RSc3301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc3301 
SymbolputA 
ID1222165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3558770 
End bp3562747 
Gene Length3978 bp 
Protein Length1325 aa 
Translation table11 
GC content70% 
IMG OID637239718 
Producttrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionNP_521420 
Protein GI17548018 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.584307 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTACGA CCACCCTCGG GGTCAAGCTG GACGATGCTT CGCGCGAACG CCTCAAGCGC 
GCAGCCCAGT CCATTGACCG CACACCGCAC TGGCTGATCA AGCAGGCGAT CTTCACCTAT
CTGGACCAAG TGGAGCGGGG GCAGCTGCCG AATGATGCGG GCGGTCCGGC GGCGGATGGC
CTCCCGTCCG CCGCCGCAGC CGTCGCGGAC ATGGCCGATG CCGATGGCAC CGAGGCCGTG
GTGCAACCCT TCCTCGAATT CGCGCAGAGC GTGCAGCCGC AGTCGGTGCT GCGCGCCGCC
ATCACGGCCG CCTACCGCCG GCCGGAAACC GAGGCGATTC CGATGCTGCT GGAGCAGGCC
CGCCTGCCGG GCGCGCTGGC CTCCGAGGCC AAGCAGCTCG CCCGCGACCT TGCCGGCAAG
CTCCGTACGC AAAAGGTCGG CACCGGCCGC GAAGGTCTGG TGCAAGGTCT GATTCAAGAG
TTCTCCCTGT CGAGCCAGGA GGGCGTGGCG CTGATGTGCC TGGCCGAGGC ACTGCTGCGC
ATTCCCGACA AGGCCACGCG CGATGCGCTG ATCCGCGACA AGATCAGCAG CGGCAACTGG
CAGTCGCATC TGGGCCAGAG CCCGTCGTTG TTCGTCAACG CCGCCACCTG GGGCCTGCTG
CTGACGGGCA AGCTGGTGGC CACGCACAAC GAGGCCGGAC TGTCGAAGGC GCTCACGCGC
ATCATCGGCA AGCGCGGCGA GCCGCTGATC CGCAAGGGCG TCGACATGGC GATGCGCCTG
ATGGGCGAGC AGTTCGTCAC CGGCGAGACC ATTTCCGAAG CGCTGGCCAA CGCCCGCAAG
TACGAGGCCG AAGGCTTCCG CTACTCCTAC GACATGCTCG GCGAAGCCGC CATGACGGAA
GAGGATGCCC AGCGCTACCT CGCGTCGTAC GAGCAGGCCA TCCGCGCGAT CGGCCAGGCT
TCGGGCGGGC GCGGCATCTA TGAGGGGCCG GGCATCTCGA TCAAGCTGTC GGCGCTGCAC
CCGCGCTACA GCCGCGCCCA GTACGACCGC GCCATCAATG AGCTGTATCC GCGCGTGAAG
GGCCTGGCCA TGCTGGCCCG CGAGTACGAC ATCGGCATCA ACATCGATGC GGAAGAAGCC
GACCGCCTGG AGCTGTCGCT CGATCTGCTC GAGCGCTTGT GCTTCGCGCC CGAGCTGGCC
GGCTGGAACG GCATCGGCTT CGTGGTGCAG GGCTACCAGA AGCGCTGCCC GTTCGTGCTC
GACTACCTCA TCGACCTGGC GCGCCGCAGC AAGCACCGCC TGATGATTCG CCTGGTCAAG
GGCGCCTACT GGGACAGCGA GATCAAGCGC GCCCAGGTCG ACGGCCTGGA GGGCTATCCG
GTCTATACGC GCAAGGTCTA CACCGACGTG TCGTACCTGG CCTGCGCGCG CAAGCTGCTG
GCCGCGCCCG ATGTCGTGTT TCCGCAGTTC GCCACGCACA ACGCCCATAC GCTGGCGGCC
ATCTATCACA TGGCCGGGCA GAACTATTAC CCCGGCCAGT ACGAATTCCA GTGCCTGCAC
GGCATGGGCG AGCCGCTGTA CGAGCAGGTG GTCGGCAACA AGCCGGGCAA GCTCAACCGG
CCGTGCCGCA TCTACGCGCC GGTCGGCACG CACGAGACGC TGCTGGCCTA CCTGGTGCGC
CGCCTGCTGG AGAACGGCGC CAACACCTCG TTCGTCAACC GCATCGCGGA CGAGTCGATT
CCGCTGGACG AACTCGTCGC CGATCCGGTG GCGGTGGTGG AGAACATGCA CGCCGAGGAA
GGCGCGCTCG GCCTGCCGCA TCCGAAAATT CCGTTGCCGC GCCATCTCTA TGGTGATGTG
CGTGCCAATT CGGCAGGGAT CGACCTGGCG AACGAGCATC GGCTGGCGTC GTTGTCGTCT
GCGCTGCTGG CCGGTACCAG CTCGGTCTGG GCCGCTGAAC CGACCATCGG CGATGCGCCA
TACACCGGTG GCACGCCGCA ACCGGTGCGC AACCCGTCGG ACCTGCGTGA CGTGGTCGGC
CACGTGACCG AAGCCACTGA AGCCGACGTC GATGCCGCGC TGTCGGCCGC CGCCGCCGCC
GCCCCGATCT GGCAAGCCAC GCTGCCCGAA GCGCGTGCCG CGCTGCTCGA TCGCGCCGCC
GACCTGATGG AAGGCGAGAT GCAGCACCTG ATGGGCCTGA TCATCCGCGA GGCGGGCAAG
ACGCTGTCCA ACGCGATCGC CGAAGTGCGC GAGGCGGTGG ACTTCCTGCG CTACTACGCG
GCGCAGGTGC GTGGCGGGTT CTCCAACGAC ACGCACCGCC CGCTGGGCCC GGTGGTCTGC
ATCAGCCCGT GGAACTTCCC GCTGGCGATC TTCACCGGCC AGGTGAGCGC GGCGCTGGCC
GCCGGCAACC CGGTGCTGGC CAAGCCCGCC GAGCAGACCC CGCTGATCGC CGCACAGGCC
GTGCGCATCC TGCGCGAAGC CGGCGTGCCG GCCGGCGCGG TGCAGCTGCT GCCGGGCCGC
GGCGAGACCG TCGGGGCCGC ACTGGTGAAG GATGCGCGCA CCAAGGGCGT GATGTTCACC
GGCTCGACCG AGGTGGCGCG CATCCTGCAG CGCACGCTGG CCGGCCGCCT GGATGCCAAC
GGTGCACCGA TCCCGCTGAT CGCCGAGACC GGCGGCCAGA ACGCGATGAT CGTCGATTCG
TCGGCGCTGG CCGAGCAGGT GGTGGCCGAT GTGCTGTCGT CCGCCTTCGA TTCCGCCGGG
CAGCGCTGCT CGGCCCTGCG CGTGCTGTGC CTGCAGGACG ACGTGGCCGA CCGCGTGCTG
GCGATGCTCA AGGGCGGCAT GGCCGAGCTG GCGATGGGCA ATCCCGATCG CCTGTCCACC
GACGTCGGCC CGGTGATCGA CGCCGAGGCG CGCGACAACA TCGTCGGCCA TATCGAAGGG
ATGCGCGCCA AGGGCCGGCG CGTGCACCAG GCGCCCGCGC CGGCTGCCTG CGCCCACGGC
ACCTTCGTGC CGCCGACGGT GATCGAACTC GACAGCCTGT CGGACCTGAC GCGCGAGATC
TTCGGGCCGG TGCTGCACGT GGTCCGCTGG AAGCGCACAG CCGACAACGC CGGCCTCACC
CGGCTCATCG AGCAGATCAA CGGCACGGGC TACGGCCTGA CGCTGGGCAT CCACACCCGC
ATCGACGAGA CCATTGCGCA CATCGTCGAG CGGGCGCGGG TGGGCAACCT GTACGTGAAC
CGCAATATCG TCGGCGCGGT GGTCGGCGTG CAGCCGTTCG GCGGCGAGGG CCTGTCGGGC
ACCGGCCCGA AGGCGGGCGG CTCGCTGTAT CTGCTGCGCC TGCTGTCGAC CTGCCCGCAG
GACGCGATGC GCACGGCGCT GGAGTTGACC GCGGGCGCCG GCACCGACGT CGAGACCGAG
GAGCGCCGCG CGCTGCTGGC GCCGTTCGAC GCGCTGCGTG ACTGGGCGCG CCGGCAGTCG
CCCGGGCTGG CCGCGCTGTG CGACCGCCTG GCGGCGGCCA CGGCCACCGG CGCGGTTCTG
ACGCTGCCGG GCCCGACCGG CGAGCGCAAC ACCTATATGC TGCTGCCGCG CGACGCGGTG
CTGTGCGTGG CGGCCGATCC GGCCGACTGG CTGCGTCAGC TGGCGGCCGT GCTGGCGGTG
GGCAGCGAGG CGGTCGTGCA GGAAAACCCT GCCATCGCCG AGGTGCTGCG TACGCTGCCG
TCGGCAGTAC AATCGCGCGT CCGGACGGTG GCGTCGCTGG AAGACGCGGC GTTCGACGCG
GTGCTGCACC ACGGCGATTC GGATCACCTG CGCGCCCTGT GCGAAGGGCT GGCGCGCCGT
GCCGGTCCGA TCGTCGGCGT GCAGGGCTTG CCGCACGGCG GACAGGGGCT GGCGCTGGAG
CGCCTGCTGA TCGAGCGTTC GCTGTCGGTC AACACGGCCG CGGCGGGTGG CAACGCCAGC
CTGATGACCA TCGGCTGA
 
Protein sequence
MATTTLGVKL DDASRERLKR AAQSIDRTPH WLIKQAIFTY LDQVERGQLP NDAGGPAADG 
LPSAAAAVAD MADADGTEAV VQPFLEFAQS VQPQSVLRAA ITAAYRRPET EAIPMLLEQA
RLPGALASEA KQLARDLAGK LRTQKVGTGR EGLVQGLIQE FSLSSQEGVA LMCLAEALLR
IPDKATRDAL IRDKISSGNW QSHLGQSPSL FVNAATWGLL LTGKLVATHN EAGLSKALTR
IIGKRGEPLI RKGVDMAMRL MGEQFVTGET ISEALANARK YEAEGFRYSY DMLGEAAMTE
EDAQRYLASY EQAIRAIGQA SGGRGIYEGP GISIKLSALH PRYSRAQYDR AINELYPRVK
GLAMLAREYD IGINIDAEEA DRLELSLDLL ERLCFAPELA GWNGIGFVVQ GYQKRCPFVL
DYLIDLARRS KHRLMIRLVK GAYWDSEIKR AQVDGLEGYP VYTRKVYTDV SYLACARKLL
AAPDVVFPQF ATHNAHTLAA IYHMAGQNYY PGQYEFQCLH GMGEPLYEQV VGNKPGKLNR
PCRIYAPVGT HETLLAYLVR RLLENGANTS FVNRIADESI PLDELVADPV AVVENMHAEE
GALGLPHPKI PLPRHLYGDV RANSAGIDLA NEHRLASLSS ALLAGTSSVW AAEPTIGDAP
YTGGTPQPVR NPSDLRDVVG HVTEATEADV DAALSAAAAA APIWQATLPE ARAALLDRAA
DLMEGEMQHL MGLIIREAGK TLSNAIAEVR EAVDFLRYYA AQVRGGFSND THRPLGPVVC
ISPWNFPLAI FTGQVSAALA AGNPVLAKPA EQTPLIAAQA VRILREAGVP AGAVQLLPGR
GETVGAALVK DARTKGVMFT GSTEVARILQ RTLAGRLDAN GAPIPLIAET GGQNAMIVDS
SALAEQVVAD VLSSAFDSAG QRCSALRVLC LQDDVADRVL AMLKGGMAEL AMGNPDRLST
DVGPVIDAEA RDNIVGHIEG MRAKGRRVHQ APAPAACAHG TFVPPTVIEL DSLSDLTREI
FGPVLHVVRW KRTADNAGLT RLIEQINGTG YGLTLGIHTR IDETIAHIVE RARVGNLYVN
RNIVGAVVGV QPFGGEGLSG TGPKAGGSLY LLRLLSTCPQ DAMRTALELT AGAGTDVETE
ERRALLAPFD ALRDWARRQS PGLAALCDRL AAATATGAVL TLPGPTGERN TYMLLPRDAV
LCVAADPADW LRQLAAVLAV GSEAVVQENP AIAEVLRTLP SAVQSRVRTV ASLEDAAFDA
VLHHGDSDHL RALCEGLARR AGPIVGVQGL PHGGQGLALE RLLIERSLSV NTAAAGGNAS
LMTIG