Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3221 |
Symbol | tISRso1 |
ID | 1222084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3483333 |
End bp | 3484175 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637239639 |
Product | transposase |
Protein accession | NP_521342 |
Protein GI | 17547940 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3293] Transposase and inactivated derivatives |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000851994 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | TTGTGGTGTA AAGGCGGGAT CTGGAAAAAA GAACATCGAG AACGCGAGGC GAAGCTGGGT CGCAAGACCA AGCGGTACCC AAGCGACCTG ACGGATATCG AATGGGTCGC TGTGCAGCCG TTGCTGCCCG GCGCCGCCGT GCGAGGTCGG CGCCGGGAGT GCGACTTGAG GGAGGTGGTC AACGCGCTGC GGTACCTGGT GCGGGCGGGC TGCGGCTGGC GCATGCTGCC CCATGACTTC CCGCCGTGGC AGACCGTGTA TTGGTGGTTT CGGCGGCTCA TGCGCCGCTT GCTGTTCCGC ACGCTGCACG ACGTGGTGCT GATGCTAGAC CGGGAGTTGG CTGGGCGGCA GCCGTGCCCG AGTGCGGGCG TCATCGACAG CCAGACAGTC AAAGCGCCCT CGGCCGACAA GCGTGGCTAC GACGCGGCCA AGAAAATCGT CGGGCGCAAG CGGCATATCG CGGTGGACAC GGATGGACGG CTGCTGATGG TGAACCTGAC GTCGGCGGAT ATTGCCGACA GCACGGGGGC ACTGGCGGTG CTGGAAGCGG TGAAGAAGCG CTGGCCGGGT GTGAAACACC TGTTCGCAGA CGGCGCCTAC GACCGCACGG CGCTGATGGA CAGGGCCGCG ACCCTCGACT TCGTGGTTGA GGTGGTGCGC CGGCACGAGC AGCAAACGGG CTTTGCCGTT CTGCCGCGCC GCTGGGTGGT CGAGCGCACC TTTGGGTGGA TGGTTCGCTG GCGCCGACTC GTACGCGACT ACGAGCAGCG CGCGGACGTC TCGGAAGCCA TGATTCATAT CGCGATGAGC GGCTTGCTAC TGCGCAGAAT CGCTCATCGT TGA
|
Protein sequence | MWCKGGIWKK EHREREAKLG RKTKRYPSDL TDIEWVAVQP LLPGAAVRGR RRECDLREVV NALRYLVRAG CGWRMLPHDF PPWQTVYWWF RRLMRRLLFR TLHDVVLMLD RELAGRQPCP SAGVIDSQTV KAPSADKRGY DAAKKIVGRK RHIAVDTDGR LLMVNLTSAD IADSTGALAV LEAVKKRWPG VKHLFADGAY DRTALMDRAA TLDFVVEVVR RHEQQTGFAV LPRRWVVERT FGWMVRWRRL VRDYEQRADV SEAMIHIAMS GLLLRRIAHR
|
| |