Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3220 |
Symbol | |
ID | 1222083 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3481757 |
End bp | 3483286 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637239638 |
Product | putative VGR-related protein |
Protein accession | NP_521341 |
Protein GI | 17547939 |
COG category | [S] Function unknown |
COG ID | [COG4253] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00376065 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCGCTATG AGAACACCTT CACCTGCGTG CTGCGCGGTG TGCCACTGAC CCCTGACTAC GACCCCCGCA TCGACTTGCC GCGTACCGAG CCGATGAGCG CTGTGGTCGT CGGCCCGCAA GGCGAGGAAG TGCACTGCGA TGCGATGGGC CGCTACAAGC TGCAATTCGT CGGGCTGCAC GCCGAAGACC ACGCACACGC GCAAGGCGCG GGCACCAGTG GCACCGATCG GGACAGCGCC TGGGTGCGGG CGGGCAACCT CTGGGCGGGG CAGCAGTACG GCATCAACAT GCCGCTGCGC GCGGGGATGG AGGTGCTCGT GGCCTTCGCC AACGGCAACC CCGACCGGCC GTACATCACG GCCGTCCTGC CGGGGTGGAA CAACATGCCG GCTACGTTCA GTAACACGGG TTCGCTGCCC GGCAACCGGT ACGTGTCCGG GATCAAGACC CAGGAGATCA AAGGCCCGGG CCACAACCAG CTCCGCCTGG ACGATACGTC CGGCCAGATC AGCGGCCAGC TTGCCAGCAC GCATGCCCAC AGCCAACTCA ATCTTGGCTA TCTGACCCAC CCGCGCGAGG AAGGCCAGGG CACGCCACGC GGCGAAGGGC TGGAGGCGCG CAGCGATGCC CACGTGGCCG TGCGCAGCGG CATGGCGATG CTGCTATCAG CGTGGCAGCG CCTGAAGGCC AGCGGCGAGC AACTGGAGCG CGCGGAATAT CTGCAATTGA TGCAGGACAG CCTGGACCTG TTCAAGAGCC TGGGCGACTA CGCTGAACAA CATCAGGGTG TTGCGATGGA CACGCAGCCG CAGGGCGCGC TGGCCGCCAC CATCAAGGGC TGGCCCGACC AGCCGGGCAC CACGCAGGGT GACCCCGCCG CGCAGGCCGC CATCGGCATC ACCGCGCCGG CCGGCATCAG CCTGGCGACG CCCAAGGCCG TGGTGACCTA TGCCGGCAGC AACGTCGATA CCGTTGCACA GAAGCATGTG CAGATCACCA GCGGCGAGCG CACCAACCTG CATGCGGGCG GCGGTCTGTC GCTCTTTGCG CATCAGGACG GCATCTCGGC CATTGCCAAC CAGGGCAAGC TGCGCCTGCA GAGCCAGGCC GACGACACGC TGATCGACTC GGCCAAGAAC ATCCACTGGA CAGCCGTGGA CGGCAAGCTC GTGGGCGTCG CCAAAGAGAT TGTGTTCATG ACGCCGGAAG GGGCCTATCT GAAGCTGCAC GGCGACACCG TCGAGGTGGG CGGGAATGGC CCGTTCGTTT CCAAGAATGC CGGTCACCAA TGGGAGGGCC CGGCGAGTAT GAGCGCGGAC CTGCCCAAGT TCGACCACGG CGCGGTGGGG CGCGTGCCCA AGCTGGTGCG CGACCTGGAC CGGTCGGCCG CGAGCGGCTG CCAGGGCGAA GTCAAGCAAG CCACCGGAGG CGCCTCGCCG GGCCAGACCA ATGCCTCAGG CGAGCTTTCC GCCGTCAAGA GCGGCCGGCT CGAACAACTG GTCGTCAACT TCTTCAAGAA CCGCAGCTAA
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Protein sequence | MRYENTFTCV LRGVPLTPDY DPRIDLPRTE PMSAVVVGPQ GEEVHCDAMG RYKLQFVGLH AEDHAHAQGA GTSGTDRDSA WVRAGNLWAG QQYGINMPLR AGMEVLVAFA NGNPDRPYIT AVLPGWNNMP ATFSNTGSLP GNRYVSGIKT QEIKGPGHNQ LRLDDTSGQI SGQLASTHAH SQLNLGYLTH PREEGQGTPR GEGLEARSDA HVAVRSGMAM LLSAWQRLKA SGEQLERAEY LQLMQDSLDL FKSLGDYAEQ HQGVAMDTQP QGALAATIKG WPDQPGTTQG DPAAQAAIGI TAPAGISLAT PKAVVTYAGS NVDTVAQKHV QITSGERTNL HAGGGLSLFA HQDGISAIAN QGKLRLQSQA DDTLIDSAKN IHWTAVDGKL VGVAKEIVFM TPEGAYLKLH GDTVEVGGNG PFVSKNAGHQ WEGPASMSAD LPKFDHGAVG RVPKLVRDLD RSAASGCQGE VKQATGGASP GQTNASGELS AVKSGRLEQL VVNFFKNRS
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