| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3208 |
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| Symbol | |
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| ID | 1222071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 3469781 |
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| End bp | 3471241 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637239626 |
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| Product | putative drug efflux lipoprotein |
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| Protein accession | NP_521329 |
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| Protein GI | 17547927 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0332853 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0695421 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCCAA AACGCTCCCT TGCGGCCCTT TTCGTTGCCA GCCTGGCAAC CGGTTGTGCC
GTCGGCCCCG ATTATGTGAA GCCCGATGTG CCGGTTCCAC AACGACTCCA GGGCCAGACG
GCGGTCGAGC AGCGCACCGC CAATGCTGCA GCCGATCTCT CCGCATGGTG GGCCGGCTTT
GGCGATCCGC AACTCACGCG GTTCGTGCTG CTCTCGCTGG AACAGAACCT GGACCTCGCA
CAGGCATTCG CCCGCGTCAC GCAAGCGCGT GCGGGCCTTG GCGCTGCCAA TGCCGCGTTG
CTGCCCTCCG GCAATGTCAC GGGCCAGGCC GCGCGTGCGT ACCAGTCCGT CGAAACCCCT
TTGGGCCGCG TCTTGAATTC GAGGCCCGGC TTCGACCGCT ACGGCAACGC TTTTGAGGCC
GATGTCAACG CAAGCTGGGA GTTGGACGTA TTCGGCGGCC TACGCCGTGG CCGCGAGGCG
GCACTTGCCG ACTACCAGGC CTCCCAAGCC GGCGCAGTCG CCACACGGCT GGTCGTGGCC
GCACAGACTG CCGATATCTA CATCACCATC CGCGGCTTGC AGACGCGCCT GAAGGTGGCC
CGCCATCAGG TACAGACGCA AGAGGAATTG CTCTCCACCG TCAACCTGCT GTACGGCAAG
GGACTGGCGG CCGAGCTTCA AGTCAGGCAG GCCGAAGGCG CACTCGCTCA GGTTCGCGCT
TCCATCCCAC AGCTTGAGGC GGGCCTCGAT GCGGCGATGA ACGCGCTGGA CGTGATGCTC
GGCTCGCTGC CGGGCACGCA CCGGGCCAAA CTGGCAGAAG GCGGCGACAT CCCGGCCGCC
CCGCAGGTTG CAATTATCGG ATCCCCCGGC GAACTGCTGA GGCGCCGCCC CGACCTCATC
GTCGCCGAGC GCCGCCTAGC CGCTTCCAAC GCGCGCATTG GCGTCGCCAT TGCCGAGTAC
TACCCGAAGT TCTCGCTCAG CGGCCTGCTC GGCAGCGCCA CATCCGTGGG AGCCGGCAGT
CTATTCGGCA GCGGCGCCAG TCAATTTGCC GGCGTGCTCG GCCTGCGCTG GCGCCTGTTC
GACTTCGGCC GTATTAATGC GCAAATCGAT CAGGCCAAGG GGCAAGAGGC GGAGATGCTC
GCCGCGTACC GGCTCGCCGT GCTGCGCGCC ACGGAAGACG TGGAAGACGC CTTCTCTGCC
CTGGTCAAGC GCGAGGAGCA AGCGGCCGTG CTCACGCAAG GCGTGGATTC GCTTGGCCGC
GCCCGAAACG CTTCGTTTGC CGCTTACCAG AAAGGCGTCG TCAGCCTGAT TGAAGTCCTG
CAAGCCGACG AAAGCCTGTT GCGTGCATCA GACGCGCGCG CCCAGGCGCA AACGGAATCG
GCGCGCGCTG CCGTCGCGGC ATTCAAGGCG CTGGGCGGCG GCTGGCAGCC TGACGAATCG
ACCGCCGTTG CAAGCAAATA G
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| Protein sequence | MLPKRSLAAL FVASLATGCA VGPDYVKPDV PVPQRLQGQT AVEQRTANAA ADLSAWWAGF
GDPQLTRFVL LSLEQNLDLA QAFARVTQAR AGLGAANAAL LPSGNVTGQA ARAYQSVETP
LGRVLNSRPG FDRYGNAFEA DVNASWELDV FGGLRRGREA ALADYQASQA GAVATRLVVA
AQTADIYITI RGLQTRLKVA RHQVQTQEEL LSTVNLLYGK GLAAELQVRQ AEGALAQVRA
SIPQLEAGLD AAMNALDVML GSLPGTHRAK LAEGGDIPAA PQVAIIGSPG ELLRRRPDLI
VAERRLAASN ARIGVAIAEY YPKFSLSGLL GSATSVGAGS LFGSGASQFA GVLGLRWRLF
DFGRINAQID QAKGQEAEML AAYRLAVLRA TEDVEDAFSA LVKREEQAAV LTQGVDSLGR
ARNASFAAYQ KGVVSLIEVL QADESLLRAS DARAQAQTES ARAAVAAFKA LGGGWQPDES
TAVASK
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