Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3199 |
Symbol | tISRso1 |
ID | 1222062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3460622 |
End bp | 3461446 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637239617 |
Product | transposase |
Protein accession | NP_521320 |
Protein GI | 17547918 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3293] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0486502 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGAAAA AAGAAGATCG AGAGCGTGAG GCGAAGCTGG CTCGGAAGAC CAAGCGTTAC CCGAGCGACC TGACGGATAT CGAATGGGCC GCTGTGCAGC CGCTGCTGCC ACGCGCGGCC GTGCGAGGCC GGCGTCGGGA GTGCGACTTG AGGGAGGTGG TCAACGCCTT GCGCTATCTG GTGCGAGCGG GCTGCGGTTG GCGCATGCTG CCGCACGACT TCCCGCCTTG GCAAACCGTG TATTGGTGGT TTCGTCGGCT CATGCGCCGC TTGCTGTTCC GCACGCTGCA CGACGTGGTG CTGATGTTGG ACCGGGAGTT GGCTGGGCGG CAGCCGTGCC CAAGTGCGGG CGTCATCGAC AGCCAGACAG TCAAAGCGCC CTCGGCCGAC AAGCGTGGCT ATGACGCGGC CAAGAAAATC GTCGGGAGCA AGCGGCATAT CGCGGTGGAC ACGGATGGAC GGCTGCTGAT GGTGAACCTG ACACCGACGG ACATTGCCGA TAGCACGGGT GCGCTGGCGG TGCTGGAAGC GGTGAAGAAG CGCTGGCCAG GCATAAAACA CCTGTTCGCT GACGGTGCGT ATGACCGCAC AGCGCTGATG GACAAGGCAT CGACCCTCGA CTTCGTGGTT GAGGTGGTGC GCCGGCACGA GCAGCAAACG GGCTTGGCCG TTCTGCCGCG CCGCTGGGTG GTCGAGCGCA CCTTTGGGTG GATGGTTCGC TGGCGCCGAC TCGTACGCGA CTACGAACAG CGGGCAGACG TATCGGAAGC CATGATTCAT ATCGCGATGA GTGGCTTGTT ACTGCGCAGA ATCGCTCATC CTTGA
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Protein sequence | MWKKEDRERE AKLARKTKRY PSDLTDIEWA AVQPLLPRAA VRGRRRECDL REVVNALRYL VRAGCGWRML PHDFPPWQTV YWWFRRLMRR LLFRTLHDVV LMLDRELAGR QPCPSAGVID SQTVKAPSAD KRGYDAAKKI VGSKRHIAVD TDGRLLMVNL TPTDIADSTG ALAVLEAVKK RWPGIKHLFA DGAYDRTALM DKASTLDFVV EVVRRHEQQT GLAVLPRRWV VERTFGWMVR WRRLVRDYEQ RADVSEAMIH IAMSGLLLRR IAHP
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