Gene RSc3143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc3143 
Symbol 
ID1222007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3392847 
End bp3394226 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content71% 
IMG OID637239561 
Producthypothetical protein 
Protein accessionNP_521264 
Protein GI17547862 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAGTT TCCTGATACA GCAGGCTACG CAGAGACAGG TGGTTGCCGC CGGAACCACC 
GCCCTCGTCA TCGTTCTGAT CCTGGCGACG ATCGCTCCGC AGGCGGCCCA TCCGCTGCCG
GCCGTCAACC CGTTCATGCC GATGTGCGCG CTGACCGTGT TCACCACGGC CGGTATCGCC
GCCTTCCTGC TGGGCGCACA GTTCATCGTC ACGCGGCAGC CGATGCTGGG CGCGCTGGGC
GGCGCCTACG CCTTCACCGC GCTGGCCGTG GCGCTGCAGC TGCTGATGTT TCCCGGGGTC
TTTACGCCCA CCGGCCTGTT CGGCGCCCAT CCGGCCAGCG CCGGCTGGAT GTGGGTGTTC
TGGCACGGCG GCTTCCCGTT CTTCGTGACC CTGGCCCTGC TGGCACGGGA GCGCTTCAAG
CCCGAAGCGG TGGATGCCAC GCACATCGCG CGGTGGACGT GGCTGCTGGT CGGCGGGCCG
GTAGCCGTCG GGCTGCTGCT GTGCGGTCTC GTCCTCGCCG TCGACCTGCC GCCGGCGCTG
GGGCCGGCGG ACAGCAGCGA GGTCATCGGC CAGGCGACCT CGCGGGTCCT GTGGGCGCTG
AATGTCGTCG CGCTGCTGCT GGTGCTGGCC AGGGGGCGCC TGCGCTCGGT GCTCGATCTG
TGGCTGGCGA TCGCCGCGCT GGCCTGCTTC ACCGACACCA GCCTGAACCT GCTGAGCCCG
AGCCGCTTCA CCCTCGGCTG GTATGTGGCC CGCATCTTCA GCATGTTCGC GCCGGGCGTG
CTGGTGTGCG TGCTGGTGTG GGAAGTCACG ACGCTGTACC GCCGGCTGTT CGAAGCGCAC
GTCTCGCTGC AGCAGCTGTC GACGCACGAC GCGCTGACCG GCATCTACAA CCGGAGCTAC
TTCAACGACC AGCTCCCGCG CGCGTTCGAC GAGGCGCGGC GCAGGGGGCG CCCCTTCTCG
CTGGTGATGA TCGATGTCGA CCACTTCAAG CGCTACAACG ACACCTTCGG TCATCTCAAG
GGCGATGGCT GCCTGGCGGC GGTCGCGTCC GCCCTGGAAG GCGTGATGCC CCGGCACACC
GGCTTCATTG CCCGCTACGG CGGGGAGGAA TTCGCCCTGG TGTTGCCTGA CGCCGGCCCG
CGCGACGCGC TGCTGCTGGC CGAAAGCGCC CGCGAGGCGG TGCTGCACCT GCGCCTCGAG
GCGCCGGCCC CCTCCCGCTA CGTGACCATC AGCGCGGGCT GCGCCACCGC CGCCCCCGGG
TCGGCGGCCT CGCTGGACGC CCTGGTCGCG GCCGCCGACG CGACGCTCTA CCGCGCCAAG
GCCGCCGGCC GCAACCTGGT CGTCCCGGCC GAAACGGCGC CGCCGGCCCA ACTGGCCTGA
 
Protein sequence
MDSFLIQQAT QRQVVAAGTT ALVIVLILAT IAPQAAHPLP AVNPFMPMCA LTVFTTAGIA 
AFLLGAQFIV TRQPMLGALG GAYAFTALAV ALQLLMFPGV FTPTGLFGAH PASAGWMWVF
WHGGFPFFVT LALLARERFK PEAVDATHIA RWTWLLVGGP VAVGLLLCGL VLAVDLPPAL
GPADSSEVIG QATSRVLWAL NVVALLLVLA RGRLRSVLDL WLAIAALACF TDTSLNLLSP
SRFTLGWYVA RIFSMFAPGV LVCVLVWEVT TLYRRLFEAH VSLQQLSTHD ALTGIYNRSY
FNDQLPRAFD EARRRGRPFS LVMIDVDHFK RYNDTFGHLK GDGCLAAVAS ALEGVMPRHT
GFIARYGGEE FALVLPDAGP RDALLLAESA REAVLHLRLE APAPSRYVTI SAGCATAAPG
SAASLDALVA AADATLYRAK AAGRNLVVPA ETAPPAQLA