Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3143 |
Symbol | |
ID | 1222007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3392847 |
End bp | 3394226 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637239561 |
Product | hypothetical protein |
Protein accession | NP_521264 |
Protein GI | 17547862 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAGTT TCCTGATACA GCAGGCTACG CAGAGACAGG TGGTTGCCGC CGGAACCACC GCCCTCGTCA TCGTTCTGAT CCTGGCGACG ATCGCTCCGC AGGCGGCCCA TCCGCTGCCG GCCGTCAACC CGTTCATGCC GATGTGCGCG CTGACCGTGT TCACCACGGC CGGTATCGCC GCCTTCCTGC TGGGCGCACA GTTCATCGTC ACGCGGCAGC CGATGCTGGG CGCGCTGGGC GGCGCCTACG CCTTCACCGC GCTGGCCGTG GCGCTGCAGC TGCTGATGTT TCCCGGGGTC TTTACGCCCA CCGGCCTGTT CGGCGCCCAT CCGGCCAGCG CCGGCTGGAT GTGGGTGTTC TGGCACGGCG GCTTCCCGTT CTTCGTGACC CTGGCCCTGC TGGCACGGGA GCGCTTCAAG CCCGAAGCGG TGGATGCCAC GCACATCGCG CGGTGGACGT GGCTGCTGGT CGGCGGGCCG GTAGCCGTCG GGCTGCTGCT GTGCGGTCTC GTCCTCGCCG TCGACCTGCC GCCGGCGCTG GGGCCGGCGG ACAGCAGCGA GGTCATCGGC CAGGCGACCT CGCGGGTCCT GTGGGCGCTG AATGTCGTCG CGCTGCTGCT GGTGCTGGCC AGGGGGCGCC TGCGCTCGGT GCTCGATCTG TGGCTGGCGA TCGCCGCGCT GGCCTGCTTC ACCGACACCA GCCTGAACCT GCTGAGCCCG AGCCGCTTCA CCCTCGGCTG GTATGTGGCC CGCATCTTCA GCATGTTCGC GCCGGGCGTG CTGGTGTGCG TGCTGGTGTG GGAAGTCACG ACGCTGTACC GCCGGCTGTT CGAAGCGCAC GTCTCGCTGC AGCAGCTGTC GACGCACGAC GCGCTGACCG GCATCTACAA CCGGAGCTAC TTCAACGACC AGCTCCCGCG CGCGTTCGAC GAGGCGCGGC GCAGGGGGCG CCCCTTCTCG CTGGTGATGA TCGATGTCGA CCACTTCAAG CGCTACAACG ACACCTTCGG TCATCTCAAG GGCGATGGCT GCCTGGCGGC GGTCGCGTCC GCCCTGGAAG GCGTGATGCC CCGGCACACC GGCTTCATTG CCCGCTACGG CGGGGAGGAA TTCGCCCTGG TGTTGCCTGA CGCCGGCCCG CGCGACGCGC TGCTGCTGGC CGAAAGCGCC CGCGAGGCGG TGCTGCACCT GCGCCTCGAG GCGCCGGCCC CCTCCCGCTA CGTGACCATC AGCGCGGGCT GCGCCACCGC CGCCCCCGGG TCGGCGGCCT CGCTGGACGC CCTGGTCGCG GCCGCCGACG CGACGCTCTA CCGCGCCAAG GCCGCCGGCC GCAACCTGGT CGTCCCGGCC GAAACGGCGC CGCCGGCCCA ACTGGCCTGA
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Protein sequence | MDSFLIQQAT QRQVVAAGTT ALVIVLILAT IAPQAAHPLP AVNPFMPMCA LTVFTTAGIA AFLLGAQFIV TRQPMLGALG GAYAFTALAV ALQLLMFPGV FTPTGLFGAH PASAGWMWVF WHGGFPFFVT LALLARERFK PEAVDATHIA RWTWLLVGGP VAVGLLLCGL VLAVDLPPAL GPADSSEVIG QATSRVLWAL NVVALLLVLA RGRLRSVLDL WLAIAALACF TDTSLNLLSP SRFTLGWYVA RIFSMFAPGV LVCVLVWEVT TLYRRLFEAH VSLQQLSTHD ALTGIYNRSY FNDQLPRAFD EARRRGRPFS LVMIDVDHFK RYNDTFGHLK GDGCLAAVAS ALEGVMPRHT GFIARYGGEE FALVLPDAGP RDALLLAESA REAVLHLRLE APAPSRYVTI SAGCATAAPG SAASLDALVA AADATLYRAK AAGRNLVVPA ETAPPAQLA
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