Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3109 |
Symbol | gspJ |
ID | 1221973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3345352 |
End bp | 3346074 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637239527 |
Product | general secretory pathway J transmembrane protein |
Protein accession | NP_521230 |
Protein GI | 17547828 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.388678 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCAA TCTCTTCTGA CCGCGTGCGC GGCTTCACCC TGCTCGAGCT GCTGGTGGCG ATCACGCTGC TGGCGATCCT GGCCGTGCTG GCCTGGCGCG GGCTGGACAG CATGACGCGC ACGCACGAAG CGCTGGCCCA GCGCGACGAG CGCATCGAGG CCCTGAAGAC GGCCTATGCG CAGTTCGATG CCGACTGCAC GCAACTGGCC GATCCGTCCA CGCTGGCGCG CCCGCCGGTG GAGGTCGATG CCGACCGCGT GCTGCTGGTG CGTGACCGGC GCGACGACGG GCAGCCGCCG GCCTGGCAGG TGGTGCTGTA TCGCGCCGTC AACGGACGGC TGGAGCGTTT GCAGAGCGCG CCCATCACCA ACCGCAGCGA CCTGCGCGGC GCGCTCGACA GCCTGCGCCA GGGCGGCGCC AATGCGGCCG TCTACAAGCT GGCCGACGCG GTGGACGGCA TCGCCGCCCG CGCCTGGATC GAGCCGGGCG GCTGGATGGA CAACACCGGC GCCCTGTCGG CGGCGCTGTT CCCGGGCGGC AGCAACACCA CCACGCTGGC GGAGCTGTCG TCGGCGTCCG CGGCCAGTGC ATCGGCCGTC GCCGCCACCA GCGTGGTGGT GCCGGTGGCC ACGGTGCGGG CCGTGGAGTT GGCGCTGCTG GTGCGCATGA CACCGCAAGG CACGCCGCAG CGCTTTACGC GCATCTGCAT GACGGGGCTC TGA
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Protein sequence | MRAISSDRVR GFTLLELLVA ITLLAILAVL AWRGLDSMTR THEALAQRDE RIEALKTAYA QFDADCTQLA DPSTLARPPV EVDADRVLLV RDRRDDGQPP AWQVVLYRAV NGRLERLQSA PITNRSDLRG ALDSLRQGGA NAAVYKLADA VDGIAARAWI EPGGWMDNTG ALSAALFPGG SNTTTLAELS SASAASASAV AATSVVVPVA TVRAVELALL VRMTPQGTPQ RFTRICMTGL
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