Gene RSc3108 details

Gene Information

• Locus tag: RSc3108
• Symbol: gspI
• ID: 1221972
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 3344964
• End bp: 3345371
• Gene Length: 408 bp
• Protein Length: 135 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 637239526
• Product: general secretory pathway I transmembrane protein
• Protein accession: NP_521229
• Protein GI: 17547827
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01707] general secretion pathway protein I; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.595144
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCCGAG CCAGCCGAAC CCGCCGGGCC GCGCGGCGGC ATGGATTCAC CCTGCTCGAA 
GTGCTGGTCG CGCTGACCAT CGTGGCGGTC GCGCTCACCG CCACGATGCG CGCGATGGGC 
AGCATGACCG TCGCCAGCGA ATCGCTGCAG ACGCGCATGC TGGCCACCTG GAGCGCCGAA 
AACCATCTCG CCGGCCTGCG GCTCGCGCAT GCGTATCCCG AACCCGGCAT GCGCGGCTTC 
GCCTGCCCGC AGGGCGACGC CCAGCTGTGG TGCGAAGAGA CGGTCGCGCC CACGCCCAAT 
CCGGTATTCC GCCGGGTCGA GGTCGCGGTC TATGCCGATG CCGGCCGTGC CGTGCGCCTT 
GCCTGGCTGG TCACCCTGCT GCCCAACGAT GCGCGCAATC TCTTCTGA 

 

Protein sequence

MSRASRTRRA ARRHGFTLLE VLVALTIVAV ALTATMRAMG SMTVASESLQ TRMLATWSAE 
NHLAGLRLAH AYPEPGMRGF ACPQGDAQLW CEETVAPTPN PVFRRVEVAV YADAGRAVRL 
AWLVTLLPND ARNLF