Gene RSc3107 details

Gene Information

• Locus tag: RSc3107
• Symbol: gspH
• ID: 1221971
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 3344470
• End bp: 3344967
• Gene Length: 498 bp
• Protein Length: 165 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 637239525
• Product: general secretory pathway H transmembrane protein
• Protein accession: NP_521228
• Protein GI: 17547826
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01708] general secretion pathway protein H; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.62689
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCAGCACC GCCCCGCTCC ACATCGCGCA GCCCGCGTGC GCCGCGGCTT CACGTTGCTG 
GAACTGCTGG TGGTGGTGGT CATCATCGGC ATCGTGCTGG GCGTGGTGGC GGTCAATGCC 
ACGCCCAACC CGCGCTCGCA GCTGGCGGAC GATGCGCAGA AGCTGGCACG CCTGATCGAG 
CTGGCCCAGG AAGAGGCGCA GCTCACCGCG CGCCCGGTGG CGTGGGAAGG CGACGCGCAG 
GGCTGGCGCT TTCTGGAGTC GACGCCCGGC GGCTGGCGCG TGATGACGCG CGACGTGCTG 
GCGCCCGGCC ACTGGCGCCA GCCGATGGAC AACGTGCAGA TCGTGGCCGG TGCCGCCGCC 
GCGCCCGGTG CGCCGCAGCG CCTGGTGTTC GGCCGCGAGG CGATCGGGCT GCCGTGGCGC 
GTGGCGCTGT CGTCCCGGGG CGCGCGCATC GACGTGGTGT CCGACGGCGG CCCGCGCGTA 
CTGACCGAGG CGCCATGA 

 

Protein sequence

MQHRPAPHRA ARVRRGFTLL ELLVVVVIIG IVLGVVAVNA TPNPRSQLAD DAQKLARLIE 
LAQEEAQLTA RPVAWEGDAQ GWRFLESTPG GWRVMTRDVL APGHWRQPMD NVQIVAGAAA 
APGAPQRLVF GREAIGLPWR VALSSRGARI DVVSDGGPRV LTEAP