Gene RSc3105 details

Gene Information

• Locus tag: RSc3105
• Symbol: gspC
• ID: 1221969
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: -
• Start bp: 3343104
• End bp: 3343790
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 637239523
• Product: putative general secretion pathway related transmembrane protein
• Protein accession: NP_521226
• Protein GI: 17547824

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.79717
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.98729
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCGTTC AACAGTCGTC CCGTCTGCTC AGCCTGGTGC TGTTCGCTGC CCTCTGTGCG 
CTGCTGGCCC ACTGGGTGCT GACGCTGTCG TCGCTGCGCT CGCTGAGCGT GCCGCGCGAA 
GCGCGCGTGG CGCAGACCGA AGCGCTGGAA ACCGGCGCTG CCGTCACGCT GTTCGGCGGC 
GGTCCGCAAA GCGGTCCGCG CGACGTGCAG GTCGCCGGCG TGGTGGCCGA TCTGGTCGAC 
GGCAGCGGCG CGGCCATCGT GTCGATCGAC GGCGGCCCGC CGCAGGCCAT CCGCGCGGGC 
AAGGCGCTGT CGCCCAGTCT GAAGCTGGTG GAGATCAAGG CCCGCGCGGT GGTGATCGAA 
CGCAACGGCG TGCGCCAGGA GATCGCGCTG CCGGCCAGCG CCGTGGCCGG CGTCTCGCCT 
GCCGCGCGCA ATGCGCCGCA GCCGCTGCCG CCGTCCGGCG CCGCCGCGCC GATGGCGACC 
CCCGCCATGC CGCCGCCCCC GCCCAGCGCC ATGGTCGGCA ATCCGGCCAA CACCGCCATG 
CCGGGCGCCG CACTGCCGCT CACGCCGGCG CTGCCCAACA TCAATGACGC CCAGAACGCG 
CCCCAGCTCG GCATCACCGG TCCGCGCCAT CGTGGGGCCG CCGCTGCGCG CAAGGGCGTC 
GGCCCCGACG ACGGCGTGGA CCACTGA 

 

Protein sequence

MTVQQSSRLL SLVLFAALCA LLAHWVLTLS SLRSLSVPRE ARVAQTEALE TGAAVTLFGG 
GPQSGPRDVQ VAGVVADLVD GSGAAIVSID GGPPQAIRAG KALSPSLKLV EIKARAVVIE 
RNGVRQEIAL PASAVAGVSP AARNAPQPLP PSGAAAPMAT PAMPPPPPSA MVGNPANTAM 
PGAALPLTPA LPNINDAQNA PQLGITGPRH RGAAAARKGV GPDDGVDH