Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3101 |
Symbol | |
ID | 1221965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3338217 |
End bp | 3340211 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637239519 |
Product | putative serine protease protein |
Protein accession | NP_521222 |
Protein GI | 17547820 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1404] Subtilisin-like serine proteases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.672072 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCCAGT CCGAGGTCCT GCCGTCGAAG CCGGCCGGCT CGGCGGCGCC GAAGGTCGAC GGCATCCCGT CGGGCCTGTC GCCGAAGGCG CGGGCGGAGC ACAACGCCGC CAAGCTCGAC GGCGCGTTGA TTCGCCTGCG GCGCAATACC GCGCCGCGCG CGACGGCCAC CCCCAACAGC ATTCTCGAGA GTTCGGCGGT GGTGGCCCGC TCCGGCAACT GCGTCGACGT CGACGTCATG ACGCAGGGCG ATGCCCAGCA GGCTGTCGCC CAGCTGGAGC GGCTGGGATT CCAGACGGCT GCGGTGTATC GGAACGTCAT CAGCGGTTGC CTGCCCGTCG CGAAGATCGA CGAGGCCGCG GCCATTCAGC AGATCCAGCG CATCAGCAAG GTGAGCCGGT CCACGCGCTC CGGCGTGGTC CAGGGCCAGG GCGACTACGC CCAGCTGAGC CGCTCGCTGC GGCAAGCAGT GAAGGGCCTG GGCATCGAGC TGACCGGCAA GGGCATTACC GTCGGCCTGA TCTCGGATTC GTTCAACTGC AATAGCCAGC TGAACCAGGA TGCACGCTAC GTTGCACAGA ACGGCCGCCA GGACACCATG GAGGACGATA TCGCACGCGG TGAGCTGCCG GGCAACGGCC GCATCCGGAT CGTGAAGGAG CTGCGCGATT GCACCGACGG CACGGACGAA GGCCGTGCCA TGGCCGAGAT CATCCACGAC GTGGCGCCGG GCGCGGACAT CGTCTTCTAT TCCGGGGGCG CGGGGATGGC CGATTTCGCG CAAGGCATCG AGACGCTGGC CTTGCCGAAG AACAAGAGCA ACGCCCAAGG CGTTGCCGGC GGCGGCGCGC AGGTCATCGT TGACGACCTC CAATATTCCT ATGAACCCGC TTTCCAGTCC GGGATTGTCG GCGCGGCGAT CGACAACGTG GTCAAGAACC ACGGGATCGC GTACTTCACC GCCGGCGGCA ACGATGGCGT AGGAGCGTCC CCTGTCTCGT ACATCAACAA CAACGCGCGC TTTGCCGACC AGCCGATCGA TCCGAACGGC ACCGGCACGC CCGGCCGTCC GCTGAACTTC GACCCCTCGG GCGCCAGCCA GGTGTTCTCC CTCCCGGTGC GGGCGACGCG CCAGATCGTC GGCTTCTACC GGTTCAGCCT CCAGCTTTAC TGGGACCAGC CGTTCGACAA CAGCACCAGC TCGCTCCAGG TGTGCCTGGC CGACAAGAAC GGCAAGCCGT TCAACGTCAT GCTCGACGGC GAGCCATACC CCAGCTGCAC CGATGCCTCG GTGATCGGCC AGCAGGCCAT TGCATGGGGG ACGCTGCTGG GAACCGAGCC GGAAGCCACC CTCCAGGTCT TCCTGGTGGA TGGCACGGCG CCGCGGCGTG TCCGTCTGCA GACCAGCCGG ATCGTCATCG GCCAGTTCGG CACAGCGGAT GCGGCCCTGT TCGGCCATGT CCTTTCGCCC AATGCGATCG CGACCGGCGC AGCCAATTAC CTCGCGACGC CGATGTGCGA TCCGTCGCTC AAGACCGCGC AGCTGGAGCG CTTCTCGTCG CACGGCGGCG GCCTGATGCT GTTCGACAAT GACGGCCGCG CGCTGCCGCG CCCCGTTCTC GACGGCAAGC CGGACCTGGT CGGGCCGGAC GGTGCGAGCT CGGTGTTTTT CGGCATCCAG GCCAAGGATG GCGACCGTGG CTTCGGCGTC TACAACCTGA ACTGCCGCTA CTACCCTGCC TATCCGTATC AGTTCTACGG CACTTCGGCC GCGGCGCCGC ACGTCGCCGG CGTGGCGGCA TTGATGCGCC AGGCGGTACC CAAGGCTACG CCGGAGCAGA TCTACAGCGC CCTGCGCAAG ACGGCCGTGG ATATGGATGC GCCCGGCCAT GACAACGCCA CCGGCGCCGG CTTCGTCCAG CCCGAGCGCG CGCTGCGCGA ACTGATCTGG CAGGCGCTGA ACCAGTATCG CTTCGCCAAT CCGCCGGGAC GATGA
|
Protein sequence | MAQSEVLPSK PAGSAAPKVD GIPSGLSPKA RAEHNAAKLD GALIRLRRNT APRATATPNS ILESSAVVAR SGNCVDVDVM TQGDAQQAVA QLERLGFQTA AVYRNVISGC LPVAKIDEAA AIQQIQRISK VSRSTRSGVV QGQGDYAQLS RSLRQAVKGL GIELTGKGIT VGLISDSFNC NSQLNQDARY VAQNGRQDTM EDDIARGELP GNGRIRIVKE LRDCTDGTDE GRAMAEIIHD VAPGADIVFY SGGAGMADFA QGIETLALPK NKSNAQGVAG GGAQVIVDDL QYSYEPAFQS GIVGAAIDNV VKNHGIAYFT AGGNDGVGAS PVSYINNNAR FADQPIDPNG TGTPGRPLNF DPSGASQVFS LPVRATRQIV GFYRFSLQLY WDQPFDNSTS SLQVCLADKN GKPFNVMLDG EPYPSCTDAS VIGQQAIAWG TLLGTEPEAT LQVFLVDGTA PRRVRLQTSR IVIGQFGTAD AALFGHVLSP NAIATGAANY LATPMCDPSL KTAQLERFSS HGGGLMLFDN DGRALPRPVL DGKPDLVGPD GASSVFFGIQ AKDGDRGFGV YNLNCRYYPA YPYQFYGTSA AAPHVAGVAA LMRQAVPKAT PEQIYSALRK TAVDMDAPGH DNATGAGFVQ PERALRELIW QALNQYRFAN PPGR
|
| |