Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc3079 |
Symbol | |
ID | 1221942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3315237 |
End bp | 3318221 |
Gene Length | 2985 bp |
Protein Length | 994 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637239496 |
Product | composite two component sensor histidine kinase and response regulator hybrid transcription regulator protein |
Protein accession | NP_521200 |
Protein GI | 17547798 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0784] FOG: CheY-like receiver |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0449118 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACGA TGCTCCGGCG CGCCCTTCCG GCGCCTGCGC ACCTCTGGCG GCGTGGCCGC ACGGCCTTGC TGCTGTGCGC CACCGCCATC GCACTGCTGA CCACCTCCGA CCGCGCACAG GCCGACCGCA CAACCCGGGC GCTGCCGCCC ATGGGCCACC CGCTGATGCC GTCTGCCGCG GCACAGATGG CAAGCGGCAC GCCGGCGGCG GCGATCGCGT TGTGGACGCT GGCCGTGCTC TCCATGCGGC ACGTGCAACT GCGCCGCGAA AACCGGCGGC GGCGGCGTGC CGAAGCCGAC CTTGCCCGGC AACTGGACTT CCACCACAGG CTGCTGGAAT CGCTGCCGTT TCCGCTGGCC GCCCAGGACA CGCAACACCG CTACGTGGCG GTCAATGCCG CGTTCTGCCA CCTGTTCGGC CAGCCGCGCG AAGCACTACT CGGACGCACC CCCGCGCATC TCGGATGGCG TTGCGCACAC ACGGCCGCAC GCGCGCAGGA CATCGACCGC CGCGCGACCG CCGCCAGCCA GGGCGCGTGC GAGGCACTGA CCATCACGGC CGCGGACGGC CGCGAGCGCC ACGTCCTGTA TTGGGTGGCG CCGGTCCACG GGCCCGATGG CCGGCCGGGC GGCACGGTGG CATCGCTGAT CGACATCGAC GGGATCCGGG ACGCGCAGGC GCCCGCCGAA CAGCGGGCGC AGCGCCTGCA TGAACTCACC GAATCCCTGC CAGCGCTGGT GTGCCAGTTC GAGATGCGAC CGGGCACGGC GGCGCGGGGC CGGATGCGCC ATCTTGCCGG CAACGCCAGC GAGACGCTGG GTGCACCGGC CGGCAAGGCG CGGGGCCGCC TGCCCTCGCC CGCGCGGTTG GTCCATCGGG ATGACCGCCA ACGCATGCGC GGCGCCGCGC TGCAATCCGC CGCGCAGCTC ACGCTGCTCG ATCAGCAGTT CCGGCACGGG AACGGCGACG GCCCGGTCCG CTGGCTACAT ATCCGTGCGC GTCCCCGTCG CGGAGCCGAC GGATGCACGG TCTGGAACGG CTACCTGCGC GACGTCACCG CAGAGCGCGC GCAGGCCGAT GCGCTGGTGT CGGCCAGGCA GGCGGCCGAA TCCGCGCTGC GCGCCAAGGA CCGCTTCCTG GCCACGATGA GCCACGAGAT CCGCACCCCG ATGAACGGCG TGCTCGGCCT GGTGGAACTG CTGCTGCAAA CCCGGCTGGA ACGCGAGCAG CAGCGGATGA TGACACTGGT GCAAGAGTCG AGCCGGGCGC TGTTGCACGT CCTCGACGAC ATCCTCGACT ACGCAAAGAT CGAGGCCGAC CGCCTGTCCA TCACGCCCGC GCCGACCGAC CTGCGCGCAC TGCTCGACAG CACGGTCGGC CTGCTGGCAA GCCGCGCCCA TGAACGGTCG CTGGCGGTAC GGGTGGACGT GGATGCAGCC GTGCCGGCCA CGGTGTCGGT GGACGGTATG CGCCTGCGCC AGGTGCTGTG CAACCTCCTG TCCAATGCCA TCAAGTTCAC CGAACACGGC AGCGTGCGCC TCAGCGCCAA ATGCATGGAA ACGGCCGCCG ACACGGTCCA CCTCATCATC CGGGTCACCG ACACCGGTAT CGGCATTGCG CCGGAAGCCC AGGCCACGCT ATTCACGCCA TTCGTACAGG CCGACAGCAC CATCACACAC CGCCAGTGCG GCACCGGCCT CGGTCTGGCC ATCTCGCGCC AGCTCGCCCG GCTGATGGGC GGTTCGCTCG ACATGGACAG CACGCCGAAC GTCGGCACGA CGCTCACGTT GCGACTGGAG GTGCCGGTCG TCGACGCACG CTATCGGCTG CCGCGCCTGG CGAGCGCAAC GGTGCGCGTG GCCGTCGACG ACGACACCTG CCGCCACGGG CTTGAGCAGT TTGCCGTCGC GGCCGGGTTG CGGGTCGTCC ATACAGGCAC TGCCGATCTC ACCCTGGTGG ACAGCGTACG CGCGCCAGCG GATGCGCCCC GCATCGTGCC CGTCACCGGA GACGCGCCCT ACACCGGGCC CGGCCGCAGC ATCCCGCGGC CGGAGGCCCT CAGCACCAAT CCGCTGAACT GGCAGGCGTT CGTGCAGGCC TGCGATACCG CGCTCGCCCG GCCCGCCGAT GGCCACGCCG CCAACGGCAT GCCCAAGAGC CGCACCGTGC CGGAGCCGGC ACCCGCTGCC GAAACCCCGG GCATGCACAT CCTGGTCGCC GAAGACCACC CGATCAACCG CGAGCTGATC ACCAGGCAAC TGCGGCTGCT TGGCTACCGC GTAACCCTGG CCGAGGATGG TGCCGCCGCA CTGCAGCGCC TGTGCGAGAC CCGCTTCGAC GCCCTGCTGA CCGATTGCTG CATGCCGCGG CTGGATGGCT TCGATCTCGC CCGGCAGATC CGCCAGCGGG AACAGCAAGC GCCCGGCGGT CGACGCCTGC CGATCCTCGC CATCACGGCA ACCACGCTGG CCGAGGAACA CGCCCGCTGC CGCACGGTCG GCATGGATGG CTACGTGCTC AAGCCCACCA CCTTGGCCAC CCTGCAGGAT GCCCTGTCCA GGCTGGGGAA CGCCGCAGTC TCGCCCGATG CGGCCAAGGC CCCGGCAACC GCCCCGGACA ACGCGCTCGC GTTCCGCCTC GACGACCTGC GCCAGACCTT GGGCGATGGC CCTGCTGCCG TCAGCCTGAT CCGCGTGTTC ACCACCGCAC TGGGAGACGA CGCGAGGCAA CTGGGCGGGC TGCTCGCCAC GGCGGACCGC CCCGCCCTGC GCAAATGGAC ACACCGGACC GGTGGTGCAC TGGCACTGCT GCACCACACC GCCATCGATG CCGAGATGTC AGCGTTCCGG CACGCCGTGC ATAGCGCTGA TGACACTGGG CTCCGGCAGG CCGGCGCCCG CATGCTGCAA CTGCTCGCGC ACCTGCAAGG CGTCATGCGG CTGGCCGAAA CCCCCTCGCC GGGCACCGCC CCCACATGCC AATGA
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Protein sequence | MATMLRRALP APAHLWRRGR TALLLCATAI ALLTTSDRAQ ADRTTRALPP MGHPLMPSAA AQMASGTPAA AIALWTLAVL SMRHVQLRRE NRRRRRAEAD LARQLDFHHR LLESLPFPLA AQDTQHRYVA VNAAFCHLFG QPREALLGRT PAHLGWRCAH TAARAQDIDR RATAASQGAC EALTITAADG RERHVLYWVA PVHGPDGRPG GTVASLIDID GIRDAQAPAE QRAQRLHELT ESLPALVCQF EMRPGTAARG RMRHLAGNAS ETLGAPAGKA RGRLPSPARL VHRDDRQRMR GAALQSAAQL TLLDQQFRHG NGDGPVRWLH IRARPRRGAD GCTVWNGYLR DVTAERAQAD ALVSARQAAE SALRAKDRFL ATMSHEIRTP MNGVLGLVEL LLQTRLEREQ QRMMTLVQES SRALLHVLDD ILDYAKIEAD RLSITPAPTD LRALLDSTVG LLASRAHERS LAVRVDVDAA VPATVSVDGM RLRQVLCNLL SNAIKFTEHG SVRLSAKCME TAADTVHLII RVTDTGIGIA PEAQATLFTP FVQADSTITH RQCGTGLGLA ISRQLARLMG GSLDMDSTPN VGTTLTLRLE VPVVDARYRL PRLASATVRV AVDDDTCRHG LEQFAVAAGL RVVHTGTADL TLVDSVRAPA DAPRIVPVTG DAPYTGPGRS IPRPEALSTN PLNWQAFVQA CDTALARPAD GHAANGMPKS RTVPEPAPAA ETPGMHILVA EDHPINRELI TRQLRLLGYR VTLAEDGAAA LQRLCETRFD ALLTDCCMPR LDGFDLARQI RQREQQAPGG RRLPILAITA TTLAEEHARC RTVGMDGYVL KPTTLATLQD ALSRLGNAAV SPDAAKAPAT APDNALAFRL DDLRQTLGDG PAAVSLIRVF TTALGDDARQ LGGLLATADR PALRKWTHRT GGALALLHHT AIDAEMSAFR HAVHSADDTG LRQAGARMLQ LLAHLQGVMR LAETPSPGTA PTCQ
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