| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3045 |
|---|
| Symbol | glpD |
|---|
| ID | 1221908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 3281615 |
|---|
| End bp | 3283192 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637239462 |
|---|
| Product | glycerol-3-phosphate dehydrogenase |
|---|
| Protein accession | NP_521166 |
|---|
| Protein GI | 17547764 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.399591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCATA CCGATGCGTC GCATCTGGAC TGTGATCTGC TGGTGGTCGG AGGAGGCATC
AACGGGGTCG GCATCGCGCG CGACGCCGTG GGCCGTGGCC TGTCGGTGGT CTTGTGCGAG
AAGGACGACC TGGCCCAGCA CACCTCTTCG GCATCGACCA AGCTGATCCA CGGCGGGCTG
CGTTATCTCG AATATTACGA ATTCAGCCTC GTGCGCAAGG CGCTGCTGGA GCGCGAGGTG
CTGCTGCGCA TGGCGCCGCA CATCATGTGG CCGCTGCGCT TCGTGATGCC GCATGACCGC
AGCCAGCGGC CGGCCTGGAT GATCCGCGCG GGTCTCTTCC TATATGACCA CCTGGCGCGC
CGGCGCTTTC TGCCCGGCTC GGAGGCGGTC AGGCTGGCGC AGCATCCGGC GGGCGGGCCG
CTCAAGCCCG GCTTTGCGCG CGGCTTCGTC TATTCCGACG GGTGGGTGGA CGACGCCCGC
CTGGTGGTGC TCAATGCCAG CGATGCCGCC GACCGCGGTG CGCAGATCCT CACCCGCACC
CGCTGCCTGA ACGCGGAGCG CCGCGCCGAC GGCTGGCATG CGTCGCTGGC GGGGCCGGAC
GGCATCCGCT CCGTGCGGGC GAAGGCGATC GTCAACGCGG CCGGACCGTG GGCCGCAGAG
TTCGCCCGGG CGGCCCACGC GCTGCCGGAC ACGCGCGGCC TGCGCCTCAT CAAGGGCAGC
CACATCATCG TGCGGCGGAT GTTCGACCAT CCGTTCGCCT ATATCTTCCA GAACCCGGAC
GGGCGGATCG TCTTTGCGAT CCCGTACCAG GATGACTTCA CGCTAATCGG CACGACGGAC
CTGGAGTACA CCGGCCCGCT GGACCAGGTC GCCATCGACG CCGGCGAGAT CAACTACCTG
TGCGAGATGG CCAACCGCTA TTTCGCGCGG CAGCTGACGC CCGCCGATGT GGTGTGGAAT
TACTCGGGCG TGCGGCCGCT GCTCGACGAC AGCGCCGCCA GTGCGTCGGC CATCACGCGC
GACTATCTGG TCGAATGCGA GACCGGGGCC GATGGGCGCG CGGCGCCGCT GATCAATGTC
TGGGGCGGCA AGATCACCAC CTACCGCAAG CTGGCCGAGG AAGCGCTGGA CAAGCTGGCG
CCGCACCTGC CGGCGGCGGG CGCACCGTCG TGGACGGCCA CGGCCGCCCT GCCCGGCGGC
GATCTGGAGG CGCCCGGCCA GTTGGTCGGG CAGTACACCT TCGCCGATTT TGTGACCCGC
CTGCAAAAAC GTTTGCCATG GCTGCCCGCC AGGCTGGCGA AGCGCTATGC GCACCAGTAC
GGCACGCGCG TGACCACGCT GCTCGCGGGC GCGGCGCGGC TGGACGACCT GGGCGCGGAG
GTCACGCCAG GCCTGTACGA AGCCGAGATC CGCTACCTGA TCGAGTACGA ATGGGCCCGC
ACGGCGCAGG ACATCCTGTG GCGGCGGACC AAGCTGGGCC TGTACGCCGC CGAGGCCGAC
CGCGGCCGCC TGGAAGCCTG GCTGACGCGG CACCCGCCGA CCGTCGAGGC CGATCCGGAG
GCGCTGCGCG CGCCCTGA
|
|---|
| Protein sequence | MHHTDASHLD CDLLVVGGGI NGVGIARDAV GRGLSVVLCE KDDLAQHTSS ASTKLIHGGL
RYLEYYEFSL VRKALLEREV LLRMAPHIMW PLRFVMPHDR SQRPAWMIRA GLFLYDHLAR
RRFLPGSEAV RLAQHPAGGP LKPGFARGFV YSDGWVDDAR LVVLNASDAA DRGAQILTRT
RCLNAERRAD GWHASLAGPD GIRSVRAKAI VNAAGPWAAE FARAAHALPD TRGLRLIKGS
HIIVRRMFDH PFAYIFQNPD GRIVFAIPYQ DDFTLIGTTD LEYTGPLDQV AIDAGEINYL
CEMANRYFAR QLTPADVVWN YSGVRPLLDD SAASASAITR DYLVECETGA DGRAAPLINV
WGGKITTYRK LAEEALDKLA PHLPAAGAPS WTATAALPGG DLEAPGQLVG QYTFADFVTR
LQKRLPWLPA RLAKRYAHQY GTRVTTLLAG AARLDDLGAE VTPGLYEAEI RYLIEYEWAR
TAQDILWRRT KLGLYAAEAD RGRLEAWLTR HPPTVEADPE ALRAP
|
|---|
| |