| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3034 |
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| Symbol | rpoB |
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| ID | 1221888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 3263489 |
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| End bp | 3267595 |
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| Gene Length | 4107 bp |
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| Protein Length | 1368 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637239442 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | NP_521155 |
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| Protein GI | 17547753 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0207324 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTACA GCTTTACCGA GAAAAAGCGT ATTCGCAAGA GTTTCGCGAA GCGCGCAACG
GTCCATCAGG TTCCCTTCCT GCTTGCCACC CAGATTCAAT CGTATGCCCA GTTCTTGCAG
GAGCATGCGT CCGTCGCACA GCGAAAGAGC GAAGGCCTGC AAGCGGCGTT CAACGCCATC
TTCCCCATCG TGTCGCACAA TGGTCTGGCA CGCATGGAAT TCGTGTCGTA CCACCTGTCC
AACCCGCCGT TCGACGTCAA GGAATGTCAA CAGCGCGGTC TGACTTTCCA CTCGGCGCTG
CGCGCGAAAG TGCGCCTGAT CATCAACGAC CGCGAGAACC CGACCAAGGT CAAGGAGATC
AAGGAGCAGG AAGTCTACAT GGGCGAGATC CCGCTCATGA CGTCGACCGG TTCGTTCGTG
ATCAACGGCA CGGAACGCGT GATCGTGTCC CAGCTGCACC GCTCGCCGGG CGTGTTCTTC
GAGCACGACA AGGGCAAGAC GCATAGCTCG GGCAAGCTGC TGTTCTCGGC GCGCATCATT
CCCTACCGCG GCTCGTGGCT GGACTTCGAA TTCGATCCGA AGGACATCCT GTACTTCCGC
GTCGACCGCC GCCGCAAGAT GCCGGTGACG ATCCTGCTGA AGTCGATCGG CCTGACGCCG
GAACAGATCC TGGCGCACTT CTTCGTCTTC GACAACTTCA CGCTCAAGAG CGACGGCGCG
CTGATGGAGT TCGTGCCCGA GCGCCTGCGC GGCGAAGTCG CCCGCTTCGA CATCTCCGAC
AAGAACGGCA AGGTCGTCGT CGAGAAGGAC AAGCGCATCA ACGCCAAGCA CATCCGTGAC
CTGGATGCCG CCGGCACCAA GCTGATCAGC GTGCCGGAAG ACTACCTGCT GGGCCGTGTG
CTGGCGAAGA ACATCGTCGA CCCGGATACC GGCGAAGTGC TGGCCAACGC CAACGACGAG
CTGACCGAAG GCGTGCTCGA GAAGCTGCGT GACGCGGGCG TGAAGGAAAT CCAGACGCTG
TACACCAACG ATCTGGACCA GGGGCCGTAC ATGTCGCAGA CGCTGCGCAC GGACGACACG
GTCGACCAGA CCGCCGCCCG TATCGCCATC TACCGCATGA TGCGCCCGGG CGAGCCGCCG
ACCGAGGACG CCGTCGAAGC GCTGTTCCAG CGCCTGTTCT ACAGCGAAGA CTCGTACGAT
CTGTCGCGCG TGGGCCGCAT GAAGGTCAAC AGCCGTCTGA ACCGCTCGGA GGGCACCGGC
CCGATGGTGC TGACGGATGA CGACATCCTC GACACCATCA AGCTGCTGGT GAACCTGCGC
AACGGCAAGG GCGAAGTGGA CGACATCGAC CACCTCGGCA ACCGTCGCGT GCGTTGCGTC
GGCGAACTGG CGGAAAACCA GTTCCGCGCC GGTCTGTCGC GCGTCGAGCG CGCGGTCAAG
GAGCGCCTCG GCCAGGCCGA GACGGAAAAC CTGATGCCGC ACGACCTGAT CAACTCGAAG
CCGATCTCGT CGGCGATTCG CGAGTTCTTC GGTTCGTCGC AGCTGTCGCA GTTCATGGAC
CAGACCAACC CGCTGTCGGA AGTGACCCAC AAGCGCCGGA TCTCGGCACT GGGCCCGGGC
GGTCTGACGC GCGAGCGCGC GGGCTTCGAA GTCCGCGACG TGCACCCGAC CCACTACGGC
CGCGTGTGCC CGATCGAAAC GCCGGAAGGT CCGAACATCG GTCTGATCAA CTCGCTGGCA
CTGTACGCGC AGCTCAACGA CTACGGCTTC CTGGAAACCC CGTACCGCAA GGTCGAGAAC
AGCAAGCTGA CCGACCAGGT CGACTACCTG TCGGCCATCG AGGAAGGCAA GTACGTGGTG
GCGCAGGCCA ACGCGACGGT GGACAAGGAC GGCAACCTGG TTGACGAACT GGTCTCCGCA
CGTGAAGGCA GCGAGCGTGA AACGCGTATG GTCACGCCGG ACCGCGTGCA ATACATCGAC
GTGGCGCCGT CGCAGATCGT GTCGGCCGCA GCTTCGCTGG TGCCGTTCCT GGAGCACGAT
GACGCGAACC GTGCACTGAT GGGCGCAAAC ATGCAGCGGC AGGCCGTGCC TTGCCTGCGT
GCGGACAAGC CGCTGGTCGG TACCGGCGTG GAACGCACCG TGGCGGTTGA CTCGGGTACC
GCCGTGCAGG CCACCCGTGG CGGCCTGGTC GACTACGTCG ACGCCAACCG CGTGGTGATC
CGCGTGAACG ATGACGAAGC CGTGGCGGGT GAAGTCGGCG TCGACATCTA CAACCTGATC
AAGTACACGC GTTCGAACCA GAACACGAAC ATCAACCAGC GTCCGATGGT CAAGGTGGGC
GATATCGTTG CCCGCGGCGA CGTGATCGCC GATGGCGCCT CGACCGACCT GGGCGAGCTC
GCGCTCGGCC AGAACATGCT GGTCGCGTTC ATGCCCTGGA ACGGCTACAA CTTCGAGGAT
TCGATCCTGA TCTCGGAGCG TGTCGTGGCT GAAGACCGTT ACACCTCGAT CCACATCGAG
GAACTGTCGG TCGTCGCCCG CGACACCAAG CTCGGACCGG AAGAAATCAC GCGCGACATC
TCGAACCTGG CTGAAGCCCA ACTGGCGCGC CTGGACGAAT CGGGCATCAC GTACATCGGC
GCGGAAGTCG AAGCCGGCGA CGTGATGGTC GGCAAGGTCA CGCCCAAGGG CGAGACCCAG
CTGACGCCGG AAGAGAAGCT GCTGCGTGCG ATCTTCGGCG AGAAGGCGTC CGACGTGAAG
GACACCTCGC TGCGCGTGCC TTCGGGCATG AGCGGTACCG TGATCGACGT GCAGGTCTTC
ACGCGTGAAG GCGTGACGCG CGACAAGCGC GCCCAGTCGA TCATCGACGA AGAGCTGAAG
CGTTACCGCC TGGACCTGAA CGACCAGCTG CGTATCGTGG AAGGCGATGC CTTCCAGCGT
CTGGAGCGTC TGCTGGTGGG CAAGGTCGTC AATGGCGGCC CGAAGAAGCT GGCCAAGGGC
ACGGCACTCA CGAAGGAATA CCTGGCCGAC CTCGACAAGT GGCACTGGTT CGACATCCGC
CCGTCGGATG ACGACGTCGC GACCCAGCTC GAAGCCGTGA AGGAAGCCAT CGAGCAGAAG
CGCCACGACT TCGACCTCGC GTTCGAAGAG AAGCGCAAGA AGCTCACGCA GGGCGACGAA
CTGCCGCCGG GCGTGATCAA GATGGTCAAG GTGTACCTGG CCGTGAAACG TCGCCTGCAG
CCTGGCGACA AGATGGCCGG CCGTCACGGC AACAAGGGCG TGGTGTCGAA GATCACCCCG
ATCGAAGACA TGCCCTACAT GGCCGACGGC ACGCCTGCCG ACATCGTGCT GAACCCGCTG
GGCGTGCCTT CGCGGATGAA CGTGGGCCAG ATTCTCGAGA CCCACCTGGG CTGGGCCGCG
CGTGGCCTGG GCGAGCGCAT CGGCAACATG CTCAAGGCGC AAGCCAAGGC CGCCGAGATG
CGCAAGCTGC TGGGCCAGAT CTACAACGAA AGCGGCAAGG TGGAAGACCT CGATAGCCTG
TCCGACGCGG AAGTGCTGGA ACTGGCCGAG AACCTGAAGA AGGGCGTGCC GTTCGCGACG
CCGGTGTTCG ACGGTGCGCA TGAGGACGAA ATCCGCCGCA TGCTGGACCT CGCCTATCCG
GAAGACATCG CGAAGGAGAA GGGCCTGACG GCTTCCAAGC AGCAGGTCAC GCTGTTCGAC
GGCCGCACCG GTGAAGCGTT CGAGCGTCCG GTCACGTTGG GTGTGATGCA CATGCTGAAG
CTGCACCACT TGGTCGACGA CAAGATGCAC GCGCGTTCGA CCGGCCCGTA CTCGCTGGTG
ACGCAGCAGC CGCTGGGCGG TAAGGCCCAG TTCGGTGGCC AGCGTTTCGG TGAGATGGAA
GTGTGGGCGC TGGAAGCGTA CGGCGCGTCC TACGTGCTGC AGGAAATGCT GACCGTGAAG
TCGGATGACG TGAACGGCCG GACCAAGGTG TACGAGAACA TCGTCAAGGG CGAGCACTCG
ATCGATGCCG GCATGCCGGA ATCGTTCAAT GTGCTGGTGA AGGAAATCCG CTCGCTGGGT
ATCGACATCG ACCTCGAGCG CAACTAA
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| Protein sequence | MAYSFTEKKR IRKSFAKRAT VHQVPFLLAT QIQSYAQFLQ EHASVAQRKS EGLQAAFNAI
FPIVSHNGLA RMEFVSYHLS NPPFDVKECQ QRGLTFHSAL RAKVRLIIND RENPTKVKEI
KEQEVYMGEI PLMTSTGSFV INGTERVIVS QLHRSPGVFF EHDKGKTHSS GKLLFSARII
PYRGSWLDFE FDPKDILYFR VDRRRKMPVT ILLKSIGLTP EQILAHFFVF DNFTLKSDGA
LMEFVPERLR GEVARFDISD KNGKVVVEKD KRINAKHIRD LDAAGTKLIS VPEDYLLGRV
LAKNIVDPDT GEVLANANDE LTEGVLEKLR DAGVKEIQTL YTNDLDQGPY MSQTLRTDDT
VDQTAARIAI YRMMRPGEPP TEDAVEALFQ RLFYSEDSYD LSRVGRMKVN SRLNRSEGTG
PMVLTDDDIL DTIKLLVNLR NGKGEVDDID HLGNRRVRCV GELAENQFRA GLSRVERAVK
ERLGQAETEN LMPHDLINSK PISSAIREFF GSSQLSQFMD QTNPLSEVTH KRRISALGPG
GLTRERAGFE VRDVHPTHYG RVCPIETPEG PNIGLINSLA LYAQLNDYGF LETPYRKVEN
SKLTDQVDYL SAIEEGKYVV AQANATVDKD GNLVDELVSA REGSERETRM VTPDRVQYID
VAPSQIVSAA ASLVPFLEHD DANRALMGAN MQRQAVPCLR ADKPLVGTGV ERTVAVDSGT
AVQATRGGLV DYVDANRVVI RVNDDEAVAG EVGVDIYNLI KYTRSNQNTN INQRPMVKVG
DIVARGDVIA DGASTDLGEL ALGQNMLVAF MPWNGYNFED SILISERVVA EDRYTSIHIE
ELSVVARDTK LGPEEITRDI SNLAEAQLAR LDESGITYIG AEVEAGDVMV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGTVIDVQVF TREGVTRDKR AQSIIDEELK
RYRLDLNDQL RIVEGDAFQR LERLLVGKVV NGGPKKLAKG TALTKEYLAD LDKWHWFDIR
PSDDDVATQL EAVKEAIEQK RHDFDLAFEE KRKKLTQGDE LPPGVIKMVK VYLAVKRRLQ
PGDKMAGRHG NKGVVSKITP IEDMPYMADG TPADIVLNPL GVPSRMNVGQ ILETHLGWAA
RGLGERIGNM LKAQAKAAEM RKLLGQIYNE SGKVEDLDSL SDAEVLELAE NLKKGVPFAT
PVFDGAHEDE IRRMLDLAYP EDIAKEKGLT ASKQQVTLFD GRTGEAFERP VTLGVMHMLK
LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK
SDDVNGRTKV YENIVKGEHS IDAGMPESFN VLVKEIRSLG IDIDLERN
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