| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3033 |
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| Symbol | rpoC |
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| ID | 1221887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 3259141 |
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| End bp | 3263370 |
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| Gene Length | 4230 bp |
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| Protein Length | 1409 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637239441 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | NP_521154 |
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| Protein GI | 17547752 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.188142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00329895 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCAT TGCTCGACCT ATTCCGTCAG GTACAGCAAG AAGAGCAGTT CGACGCGATC
AAGATCGGCC TCGCATCGCC CGAGAAAATC CGTTCGTGGT CGTTCGGCGA GGTCAAGAAG
CCTGAGACCA TCAACTACCG CACGTTCAAG CCGGAGCGTG ACGGCCTGTT CTGCGCCAAG
ATCTTCGGCC CGATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGTGGTGTGA TCTGCGAGAA GTGCGGCGTG GAAGTGACGC TGGCCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCGAACT GGCTGCGCCG ACCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGTC TGGGCATGGT GCTCGACATG ACGCTGCGCG ACATCGAGCG CGTGCTGTAC
TTCGAAGCGT TCGTGGTGGT CGAACCGGGC ATGACGCCGC TCAAGAAGAG CCAGATCATG
TCGGAAGACG ATTACCTGGC CAAGTGCGAC GAGTACGGCG AGGGTGAATT CGTCGCCCTG
ATGGGTGCCG AGGGCATCCG TGAACTGCTG CGCGGCATCG ACATCGAGAA GCAGATCGAG
ACCATCCGTG CCGAGCTGCA GGCCACGGGC TCGGAAGCCA AGATCAAGAA GTTCGCCAAG
CGCCTGAAGG TGCTCGAGGC GTTCCAGCGT TCGGGCATCA AGCCGGACTG GATGATCCTC
GAAGTGCTGC CGGTGCTGCC GCCCGAGCTG CGTCCGCTGG TGCCGCTGGA CGGCGGCCGT
TTCGCCACGT CGGACCTGAA CGACCTGTAT CGCCGAGTGA TCAACCGGAA CAACCGTCTG
AAGCGTCTGC TCGAGCTGAA GGCGCCGGAG ATCATCGTGC GCAACGAAAA GCGCATGCTG
CAGGAAGCGG TGGACTCGCT GCTGGACAAC GGCCGTCGCG GCAAGGCGAT GACCGGCGCC
AACAAGCGTC CGCTGAAGTC CCTGGCCGAA ATGATCAAGG GCAAGGGCGG CCGTTTCCGT
CAGAACCTGC TGGGCAAGCG CGTGGACTAC TCGGGCCGTT CGGTCATCGT GGTGGGCCCG
ACGCTCAAGC TGCACCAGTG CGGCCTGCCC AAGCTGATGG CGCTCGAGCT GTTCAAGCCC
TTCATCTTCC ACAAGCTGGA AACGATGGGC ATCGCCACCA CCATCAAGGC GGCGAAGAAG
GAAGTGGAAA GCCAGACGCC GGTGGTGTGG GACATCCTCG AAGAGGTGAT CCGCGAGCAC
CCGGTGATGC TGAACCGTGC GCCGACGCTG CACCGCCTGG GCATCCAGGC GTTCGAGCCG
GTGCTGATCG AAGGCAAGGC CATCCAGCTG CACCCGCTGG TCTGCGCGGC GTTCAACGCC
GACTTCGACG GTGACCAGAT GGCTGTCCAC GTTCCGCTGT CGCTCGAAGC GCAGATGGAA
GCGCGCACGC TGATGCTGGC GTCGAACAAC GTACTGTTCC CGGCCAACGG CGATCCGTCG
ATCGTGCCGT CGCAGGACGT GGTGCTGGGT CTGTACTACA CGACCCGCGA CAAGATCAAC
GGCCGCGGCG AGGGCATGAC CTTCGCCGAC ATCTCGGAAG TGATCCGCGC CTACGAGAAC
AAGGAAGTCG AGCTGGCTTC GCGCGTGAAC GTGCGGATCA CCGAGTACGA CCTGGTGAAC
CCGGAAGCCG ACGGCGACGC CCGTTTCGCG CCGAAGATCA CGCTGCAGGC CACCACGGTC
GGCCGCGCGA TCCTGTCGGA GATCCTGCCG AAGGGTCTGC CGTTCTCGGT GCTGAACAAG
CCGCTGAAGA AGAAGGAAAT CTCGCGCCTG ATCAACACGG CGTTCCGCAA GTGCGGTCTG
CGCGAGACGG TGATCTTCGC CGACAAGCTG CTGCAGTCGG GCTTCCGCCT GGCCACGCGC
GCTGGCATCT CGATCGCCAT CGACGACATG CTGGTGCCGC CGGCCAAGGA GAAGATCATC
TCCGAGGCTG CCGCCAAGGT GAAGGAATAC GACAAGCAGT ACATGTCGGG TCTGGTGACG
GATCAGGAGC GCTACAACAA CGTCGTGGAC ATCTGGGGCG CTGCCGGCGA CCAGGTGGGC
AAGGCGATGA TGGAGCAGCT CCAGACCGAA GACGTGGTCG ACCGCCACGG CAAGACCGTC
AAGCAAGAGT CGTTCAACTC CATCTACATG ATGGCCGACT CGGGCGCACG GGGCTCCGCG
GCGCAGATCC GTCAGCTGGC CGGCATGCGT GGCCTGATGG CCAAGCCGGA CGGCTCGATC
ATCGAAACGC CGATTACCGC GAACTTCCGC GAAGGCCTGA ACGTTCTGCA GTACTTCATC
TCGACCCACG GTGCGCGTAA GGGTCTGGCT GATACGGCAC TGAAGACCGC GAACTCGGGT
TACCTGACCC GTCGTCTGGT CGACGTGACG CAGGATCTGG TGGTGGTGGA AGACGATTGC
GGCACCTCCA ACGGCGTGGC CATGAAGGCC CTGGTCGAAG GCGGTGAAGT GATCGAAGCC
CTGCGCGACC GTATCCTGGG CCGCGTGGTC GTCAACGACG TGGTGAACCC GGAAACGCAG
GAAACCGCGA TCGAAGCCGG CACGCTGCTG GACGAAGACC TGGTCGAGCT GATCGATTCG
ATCGGCGTGG ACGAGGTCAA GGTCCGCACG CCGCTGACCT GCGACACGCG CTACGGCCTG
TGCGCCAAGT GCTACGGCCG CGATCTGGGC CGCGGCGTGC TGGTGAACTC GGGCGAAGCG
GTGGGCGTGA TTGCCGCCCA GTCGATCGGC GAGCCGGGCA CGCAGCTGAC CATGCGTACG
TTCCACATCG GTGGTGCGGC ATCGCGTGCG GCAGTGGCAT CGAGCGTGGA AGCCAAGGCG
ACCGGTACCG TGCGCTTCAC GGCGACCATG CGTTACGTCA CCAACGCGAA GGGCGAGCAG
ATCGTCATCT CGCGTTCGGG CGAGGCGCTG ATCACCGACG ACCACGGCCG CGAGCGTGAG
CGCCACAAGA TCCCGTACGG CGCGACGCTG CTGGTGCACG ATGGCCAGTC CATCAAGGCC
GGCACGCAGC TCGCCACGTG GGATCCGCTG ACGCGTCCGA TCATTTCGGA GTACTCGGGC
ACCATCAAGT TCGAGAACGT CGAAGAGGGC GTGACCGTCG CCAAGCAGAT GGACGAAGTG
ACCGGCCTGT CGACGCTGGT GGTGATCGAC GCCAAGCGCC GCACCTCGGC CTCGAAGGGC
ATCCGTCCGC AGGTGAAGCT GCTCGACTCG TCGGGCGCCG AAGTGAAGAT CCCGGGCACG
GACCACTCCG TGACCATCGG CTTCCAGGTC GGCGCGCTGA TCACCGTGAA GGACGGTCAG
CAGGTGCATG TGGGTGAAGT GCTGGCCCGT ATCCCGACCG AATCGCAGAA GACGCGTGAC
ATTACCGGTG GTCTGCCGCG CGTGGCCGAG CTGTTCGAAG CGCGTTCGCC GAAGGACGCC
GCCGTGCTGG CGGAAGTCAC CGGCACGACC TCGTTCGGCA AGGACACCAA GGGCAAGCAG
CGCCTGGTGA TCACGGACCT CGACGGCAAT GCCCACGAGT TCCTGATCGC CAAGGAAAAG
CAGGTGCTGG TGCACGACGG CCAGGTGGTC AACAAGGGCG AGATGATCGT CGAAGGCCCG
GCCGACCCGC ACGACATCCT GCGCCTGAAG GGCGTGGAAG AGCTGGCGAC CTACATCGTC
GACGAAGTGC AGGACGTGTA CCGTCTGCAG GGCGTGAAGA TCAACGACAA GCACATCGAA
GTGATCGTGC GTCAGATGCT GCGCCGCGTG CAGATCGTCG ATGTGGGCGA CACCAAGTTC
ATCCCGGGTG AACAGGTGGA GCGCTCGGAG CTGCTCGACG AGAACGACAA GGTCATCGCC
GAAGGCAAGC GTCCGGCTAC CTACGAGAAC CTGCTGCTGG GTATCACGAA GGCGTCGCTG
TCGACCGACA GCTTCATCTC GGCGGCGTCG TTCCAGGAAA CCACGCGCGT CCTCACCGAA
GCCGCCATCA TGGGCAAGGT GGACGACCTG CGCGGTCTGA AGGAAAACGT CATCGTCGGC
CGCCTGATCC CGGCCGGTAC CGGTCTGGCT TACCACCGTG CCCGCAAGGC CAAGGAAGCC
GCCGACCGCG ACCGCGCCGC TGCGATTGCG GAAGAAGAAG CCGCCTCGAT CTTCGAGACG
CCCGCCGTCC AGCAGGAAGG CGACGCGTAA
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| Protein sequence | MKALLDLFRQ VQQEEQFDAI KIGLASPEKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELAAP TAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAFVVVEPG MTPLKKSQIM SEDDYLAKCD EYGEGEFVAL
MGAEGIRELL RGIDIEKQIE TIRAELQATG SEAKIKKFAK RLKVLEAFQR SGIKPDWMIL
EVLPVLPPEL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLLELKAPE IIVRNEKRML
QEAVDSLLDN GRRGKAMTGA NKRPLKSLAE MIKGKGGRFR QNLLGKRVDY SGRSVIVVGP
TLKLHQCGLP KLMALELFKP FIFHKLETMG IATTIKAAKK EVESQTPVVW DILEEVIREH
PVMLNRAPTL HRLGIQAFEP VLIEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLSLEAQME
ARTLMLASNN VLFPANGDPS IVPSQDVVLG LYYTTRDKIN GRGEGMTFAD ISEVIRAYEN
KEVELASRVN VRITEYDLVN PEADGDARFA PKITLQATTV GRAILSEILP KGLPFSVLNK
PLKKKEISRL INTAFRKCGL RETVIFADKL LQSGFRLATR AGISIAIDDM LVPPAKEKII
SEAAAKVKEY DKQYMSGLVT DQERYNNVVD IWGAAGDQVG KAMMEQLQTE DVVDRHGKTV
KQESFNSIYM MADSGARGSA AQIRQLAGMR GLMAKPDGSI IETPITANFR EGLNVLQYFI
STHGARKGLA DTALKTANSG YLTRRLVDVT QDLVVVEDDC GTSNGVAMKA LVEGGEVIEA
LRDRILGRVV VNDVVNPETQ ETAIEAGTLL DEDLVELIDS IGVDEVKVRT PLTCDTRYGL
CAKCYGRDLG RGVLVNSGEA VGVIAAQSIG EPGTQLTMRT FHIGGAASRA AVASSVEAKA
TGTVRFTATM RYVTNAKGEQ IVISRSGEAL ITDDHGRERE RHKIPYGATL LVHDGQSIKA
GTQLATWDPL TRPIISEYSG TIKFENVEEG VTVAKQMDEV TGLSTLVVID AKRRTSASKG
IRPQVKLLDS SGAEVKIPGT DHSVTIGFQV GALITVKDGQ QVHVGEVLAR IPTESQKTRD
ITGGLPRVAE LFEARSPKDA AVLAEVTGTT SFGKDTKGKQ RLVITDLDGN AHEFLIAKEK
QVLVHDGQVV NKGEMIVEGP ADPHDILRLK GVEELATYIV DEVQDVYRLQ GVKINDKHIE
VIVRQMLRRV QIVDVGDTKF IPGEQVERSE LLDENDKVIA EGKRPATYEN LLLGITKASL
STDSFISAAS FQETTRVLTE AAIMGKVDDL RGLKENVIVG RLIPAGTGLA YHRARKAKEA
ADRDRAAAIA EEEAASIFET PAVQQEGDA
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