| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3030 |
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| Symbol | |
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| ID | 1221884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 3251574 |
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| End bp | 3256322 |
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| Gene Length | 4749 bp |
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| Protein Length | 1582 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637239438 |
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| Product | putative signal peptide protein |
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| Protein accession | NP_521151 |
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| Protein GI | 17547749 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2373] Large extracellular alpha-helical protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0044927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.201632 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCTGCC TTGCGGCGCT CGCGGTCGCC GTGCCCGCCC GCGCCGACGA GGCGGCCGCC
GTGCGCGACA AGCCGAACCC CACGCTCGCC GAGGTGCCCG CCAGCGGCTA CGTGCCGTTC
ACCGGCCAGC CGTTCTTCCT GCTGTCGGAC GCGAGCTACG GCACCGACCA GGAGGCGATG
GTGCGCCTGG AGGCCCCTGG CCGCGAATAC AAGGACGAGC TCGCCCGCTA CGGCGGCGCC
GATATCCTGG TCTACCGCGT GCCGCAGCCG CTCGATTTCC TGAAGGCGCA GAAGAACCTG
CACCGCATCG ACGTCAAGGC CAACTACACG GGCGAGGGCC TGGCCAACAC GCTGGCCTAC
CTGTGGGACA ACTGGACCCG CCAGGCGCGC CGAGCCTGGC AGCGCGTGCT GTCGTTCGCC
ACGCGCAGCA AGGCGGTGGA AGCCGCGCCG CAGTTCAGCA TGGGCGACCA GATGGCCGCG
CCCACGCGCT TTTCGAACCC CCCGCAGTAC GCGCCGCTCA AGGGCTACGA ACTGCTCGGC
CGCTTCCGCT ACCCGATCTG GGAGGCCAAG CCGATCGCGC CGCCCAAGGA CGTCAAGCTC
GAAGGCAGCA GTAGCGAGTG GATGCCGCAG AACGTCGGCA ACGTGATGAT TCCGGTGGGC
AAGCTGCCGG CGGGGCTGTA CATCGTCGAG GCGGTGATCG GCGCGTACCG CGCGCATACG
CTGCTGTTCG TCTCCGATAC CGTGGCCGTG ACCAAGGGCA CTTCGCAGGG GATGATGGTG
TGGACCGCCG AGCGCAAGAG CGGCAAGCCG GTGGCCGGCA GCGCCGTCAG CTGGACCGAC
GGCGTGGGCG TGCTGGCCTC CGGCACCACG CAGGCCGACG GCACCGCCGA GCTGCGCCAC
GTCGCGCCCG AGCGCAGCTA CGTGCTCGGC GTCGATCGCG CGGGTGGCGT GTTCATCTCC
GAGAATTTCT ATTACGACAG CGAGATCTAC AACACCAAGC TGTATGCCTT CACCGACCGG
CCGCTGTACC GCCCGGGCGA TGACGTGCGC GTCAAATTCA TCGGCCGCAA CTTCCGGAGC
GCGACCGAGT CGACCGCGCC GGCCGCCGGC GACATCAAGC TCGACGTGAT CGACCCGACC
GGCGCGCCGG TGGCGACCAC CACCACGCGG CTGTCGGGCG AGACCGGCGC CGACGCGCGC
TTCACGCTGC CGTCCAACGC ACAGGCCGGC GGCTACACGC TGCGCTTCGA CTACGGCGGC
AGCACCTACG GCGGCGCCTT CCGCGTGGCC GAGTACATCA AGCCGCATTT CGACGTGAAC
CTGTCGCTGG ACAAGGCCGG CTACGGCACC GGCGAGGCCA TCAAGGGCAA GATCAGCCTG
CGCTATCCGG ACGGCAAGCC GGTCAAGGAC GGCAAGGTAT CGGTCAGCCT GCGCGCGCAG
CAGGTGACGA TGGTCGAGGG CGAGTTGCAA TACGCCGGCC TGTTCCCGGT CAAGCTGGAG
CAGCAGGAAC TGACCACCGA CGGCGACGGC AACGCCGCGC TGACGCTACC GGCGGCCAAG
GAGCCGAGCC GCTATGTCGT CACGGTGTTC GCCAACGACG GCGCCGCCTA TCGGGTGAAG
GTGACGCGCG AGCTGCTGGT GGCGCGCGGC GCGGCGCCGT ACAGGCTGTC CACGGCCGCC
AACTTCACCA CGCCGGGGCA GAGCGTGTCG TTCAACCTGC AGCCGCTGCC GGCGGTGGAC
GGTGTGCGCG GTGCCAGTGC GCCGCCCGCC AAGTGGGAGC TGGTGCGGCT CGAATCGCGC
ACGCGCACCG AGGGCGCGCT GCAGCCGGAT GCCAAGGGCA GCGCCACCTT CCCGGTCAAG
TTCGAGCAAC CCGGTTCATA CACGCTGTCG GTGCGCGATG CGGCCGGCAA CCTGCTTGCG
GCGTCCAGCC ACTGGGTGGC CGGCGACGGC GTGCAGACCG TGCCGGGCAA CATCGAGATC
GTGTTCGACC GCGACCGCTA CCAGATCGGC GACACCGCCG AGGCGCTGAT CACCTTCCCG
CAGCCGGTGG ACGATGCGCT GCTGACGCTG GAGCGCGACA AGGTCGAGCG CCACGCGCTG
CTGTCGGGCG GCGGCGACTG GCTGGCGCTG CAGCGCGTGA CGCCCTCGCA GTACCGCGCC
CGCATCAAGA TCGGCGCCGA GTTCAGCCCC AACATGACCT TCTCCGCGCT GACCGTGCGC
GACGGCGACA TGGTGTTCCA GAACGCCGGC ATCGTCGTCA CGCAGCCGGC GCTGGACCTG
ACCGTGCGCG CGGACAAGGC CGTCTACGCG CCGGGCGAGA CCGTCACGCT GGACCTGAGC
AGCGCGCTGG CCGGCAAGCC GGTGCCGGCC AACCTGACCG TATCGGTGGT CGACGAGATG
GTCTATGTGC TGCAGCCGGA GGTGGCGCCG TCCATCGTCG ATTTCTTCTA TCACCCGCGC
CGCAACAGCG TGCGCACCAC TTCCAGCCAG AGCTTCATCA GCTACGACCT GGCGCTGTCG
TCGCTGCCCG GCAAGCCGGG CGGCACCTAC GGCCGCCACA ACGAGCGCGG CGTGAAGGTG
CTCGAGCGCC CGCGCCGCGA CGAGCAGGAC ACCGCCGCCT GGGTCGCCAA CCTGCAGACC
GGTGCCGACG GCCGCGCGCG CATGACCTTC ACGATGCCCG ATTCGCTGGC GCGCTGGCGC
GTCACCGTGC GCGCGGTCTC GACCACGGGC GCGGCGGACG GCATCGTCGG CCAGCGCACC
GCCAGCATTC GCTCCGACAA GGCGCTGTAC CTGAAGTGGA CCGGCCCGTC GCGCTTTCGC
GAAAGCGACC AGCCGCGCCT CGACATGGTC GCCTTCAACC AGACCGACAA GGACATCACG
GCGGACTGGA TCGTCTCGGG CGCTGGCCTG AACATCAACC AGCGCGTGAC GCTCAAACGC
GGCGCCAACT ACCTGCATGC GCCGCTGTCG GGTACCCCTG CGCTGCAGGC GGGCATCGTC
AACGCCGAAC TCAAGCAGGA CGACAGGGTG TCCGACCGCC TGCAGACCAC GGTCAAGCTT
GATGCGACCG GCTGGCTGGC CGATCGCGAA AGCATCGTCC CGCTCACGCA GCTGCAGGGC
ACGCGCCTGC CGCTCGGCTT GCCCGCCGAT GCACGCGACG TGCGCCTGCG CGTGGTCGGC
AACACCGCCA GCCAGTTCGC CCGTGTGGCC GACGACCTGA TCGAATACCC GTACGGCTGC
GCCGAGCAGA CCGCCAGCCG CCTGATCCCG CTGGCGCTGG CGCAGCAGAG CCTGGCCGCC
ACCGGCGCGC GCCTGCCCGA CGGCAACCCG GCGGGCACGC AGGGTGTCGA TGCGCTGCTG
CGCACGCAGC GCCAGCGCCT CGCGCTGCTG GCCGGCACCA ACGGCACCTT CGGCTGGTGG
GGCGAGCTGA CCAGCAGCAG TGCGCTGATC ACCTCGTACG CTTACTACGC CGATTGGCTG
GCCAGCCGCG CGGTCGGCAT CAGCCTGCCC GCCGACAACT GGAAGCAGGT GCTGGAAGCC
TATAAGCGCA CCAGCCAGAA CGAGCCGCTG CTGCATCGCG CGCTGGCGCT GTGGTTTGCC
AACGAGATGG GCCTGCCGGT GGCGACGCCG CTGTCGGGCG TGGCGGCGGA GCTCGCGCGC
AATGCCAAGG CGCCGGCCGA TGCCGAGCCC GCGCCGGGCG ACAGCCTGAT CTTCGTCGCG
CCCGATTCGC CGCGCGGCCG CCAGGTGGCG GCGATCCTGA CGGCACAACT GATGCGCCAG
GTCGGGCAGC CGGTGCCGGA GGCGCTCGTG TCGGCCGACA TCGCGGCGCG CACGGCGCTG
GCCAATGACA CCTCGCCGCT GGTGCAGAGC CTGCTGCTGA TGGGCGGTGG CCGCTCCGCG
GCCGACCCCG CGCCGCTGCT GGCCCGTGCC AGCGCCGCGA TGCCGACCAT GGACCGCGCC
GTTGCGCTGG TCTGGCTGCA GAAGGGCCTG GGCGGCCTGC AGGGCGCGAA CGTCGCGGCC
ATCCAGCCGG TGCTGTCGGC CGGCGGCTGG CAGGCGGCGC GCTCGACGGT CGGCGTGCCG
ACCTGGCGCT GGGCCGGCGC GCAGCCGCCC GCCGCGCTCG ACCTGGCGAG CACGCCGTCC
GACGTGACCA CGCAGTCGGC CATCGTGTCC TACCGCAGCC GCGCGCCGGA GGCCTCCAGG
CTGCCGATCA CGGTGGAGCG CAAGCTGTAC CGCCTGGAGC CGGTCGACGC CGCCGCCCCG
AAGGACGACG CCAAGGCGCC CAAACGTGCC GCCGCCGATG TCACCGCCAA CGCCGGCATC
ACCTTCAAGG CCAAGCCGGT CAAGCCCGGC GACACGCTCG ACAGCAACGC GCTCTACGTC
GACGAGGTCG TGCTGACGCC GCGCCAGGGC ACGTACCGCT ACGGCCTGGT CGAAGTGCCG
CTGCCGCCGG GCGCCGAGGT GGAAGCCACC ACCTGGGGCA TCCAGATCGA CGGCCTGAAG
GGCGAGCCGA ACGAGGGCAA CGGCCCGCAG CCCTTCGAGC GGCGCGCGGC CTACGAGATG
GGCCAGCTGT CGTACAACCA GCCGGTGCCG ACGCTGGAGC GTCCGACCGC GCTGCGCCAG
CTGGTGCGCT TCTCGCTGCC GGGCCGCTTT GCGCTGCCGC CGGCGCGCTA CTTCCGCATG
TACCAGCCGG AAGCCAAGGC GCTGCAGGGC GACGGCAAGG CCGCCAGCTA TCCGTTCAAG
GTGGAGTGA
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| Protein sequence | MICLAALAVA VPARADEAAA VRDKPNPTLA EVPASGYVPF TGQPFFLLSD ASYGTDQEAM
VRLEAPGREY KDELARYGGA DILVYRVPQP LDFLKAQKNL HRIDVKANYT GEGLANTLAY
LWDNWTRQAR RAWQRVLSFA TRSKAVEAAP QFSMGDQMAA PTRFSNPPQY APLKGYELLG
RFRYPIWEAK PIAPPKDVKL EGSSSEWMPQ NVGNVMIPVG KLPAGLYIVE AVIGAYRAHT
LLFVSDTVAV TKGTSQGMMV WTAERKSGKP VAGSAVSWTD GVGVLASGTT QADGTAELRH
VAPERSYVLG VDRAGGVFIS ENFYYDSEIY NTKLYAFTDR PLYRPGDDVR VKFIGRNFRS
ATESTAPAAG DIKLDVIDPT GAPVATTTTR LSGETGADAR FTLPSNAQAG GYTLRFDYGG
STYGGAFRVA EYIKPHFDVN LSLDKAGYGT GEAIKGKISL RYPDGKPVKD GKVSVSLRAQ
QVTMVEGELQ YAGLFPVKLE QQELTTDGDG NAALTLPAAK EPSRYVVTVF ANDGAAYRVK
VTRELLVARG AAPYRLSTAA NFTTPGQSVS FNLQPLPAVD GVRGASAPPA KWELVRLESR
TRTEGALQPD AKGSATFPVK FEQPGSYTLS VRDAAGNLLA ASSHWVAGDG VQTVPGNIEI
VFDRDRYQIG DTAEALITFP QPVDDALLTL ERDKVERHAL LSGGGDWLAL QRVTPSQYRA
RIKIGAEFSP NMTFSALTVR DGDMVFQNAG IVVTQPALDL TVRADKAVYA PGETVTLDLS
SALAGKPVPA NLTVSVVDEM VYVLQPEVAP SIVDFFYHPR RNSVRTTSSQ SFISYDLALS
SLPGKPGGTY GRHNERGVKV LERPRRDEQD TAAWVANLQT GADGRARMTF TMPDSLARWR
VTVRAVSTTG AADGIVGQRT ASIRSDKALY LKWTGPSRFR ESDQPRLDMV AFNQTDKDIT
ADWIVSGAGL NINQRVTLKR GANYLHAPLS GTPALQAGIV NAELKQDDRV SDRLQTTVKL
DATGWLADRE SIVPLTQLQG TRLPLGLPAD ARDVRLRVVG NTASQFARVA DDLIEYPYGC
AEQTASRLIP LALAQQSLAA TGARLPDGNP AGTQGVDALL RTQRQRLALL AGTNGTFGWW
GELTSSSALI TSYAYYADWL ASRAVGISLP ADNWKQVLEA YKRTSQNEPL LHRALALWFA
NEMGLPVATP LSGVAAELAR NAKAPADAEP APGDSLIFVA PDSPRGRQVA AILTAQLMRQ
VGQPVPEALV SADIAARTAL ANDTSPLVQS LLLMGGGRSA ADPAPLLARA SAAMPTMDRA
VALVWLQKGL GGLQGANVAA IQPVLSAGGW QAARSTVGVP TWRWAGAQPP AALDLASTPS
DVTTQSAIVS YRSRAPEASR LPITVERKLY RLEPVDAAAP KDDAKAPKRA AADVTANAGI
TFKAKPVKPG DTLDSNALYV DEVVLTPRQG TYRYGLVEVP LPPGAEVEAT TWGIQIDGLK
GEPNEGNGPQ PFERRAAYEM GQLSYNQPVP TLERPTALRQ LVRFSLPGRF ALPPARYFRM
YQPEAKALQG DGKAASYPFK VE
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