| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2993 |
|---|
| Symbol | rpoA |
|---|
| ID | 1221847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3226071 |
|---|
| End bp | 3227051 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637239401 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | NP_521114 |
|---|
| Protein GI | 17547712 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAG CACTCCTGAA GCCCAAAATT ATTGCGGTTG AGCCGCTTGG CGATCATCAC
GCGAAGGTCG TCATGGAACC GTTCGAGCGG GGCTACGGCC ATACGCTCGG CAACGCGCTG
CGCCGCGTGC TGCTGTCGTC GATGGTCGGC TATGCGCCGA CCGAAGTGAC GATCGCTGGG
GTCGTCCACG AATATTCCAC CATCGATGGC GTGCAGGAAG ACGTCGTCAA CCTGCTGCTG
AACCTGAAAG GCGTGGTGTT CAAGCTGCAC AACCGTGACG AGGTCACGGT GTCGCTGCGC
AAGGAAGGCG AAGGTGTGGT CACCGCGGCG GACATCGAGC TGCCGCACGA TGTCGAGATC
ATCAATCCGG GCCATGTCAT CGCCAGCCTG TCGGCCGGTG GCAAGCTGGA TATGCAGATC
AAGGTCGAGC AAGGCCGCGG CTACGTGCCG GGCAACGTGC GCAAGTTCGG CGACGAGTCG
AGCAAGGTGA TCGGCCGCAT CGTGCTGGAC GCCTCGTTCG CGCCGGTGCG CCGCGTGTCG
TATGCCGTCG AGTCCGCTCG CGTCGAGCAG CGTACCGACC TCGACAAGCT GGTGATGAAC
ATCGAGACCA ACGGCGTGAT CTCGCCCGAG GAAGCGATCC GCCAGTCGGC GCGCATCCTG
GTCGACCAGC TGTCGGTGTT CGCAGCGCTG GAAGGAACCG AGAGCGCTGC CGAAGCCGCT
GCCGCCCGTG CACCGCAGAT CGATCCGATC CTGCTGCGCC CGGTCGACGA CCTGGAGCTG
ACCGTCCGCT CGGCGAACTG CCTGAAGGCC GAAAATATTT ACTATATTGG CGACCTGATC
CAGCGCACCG AGAACGAGCT GCTCAAGACC CCGAACCTGG GTCGCAAGTC GCTCAACGAG
ATCAAGGAAG TCCTCGCTTC GCGTGGCCTG ACGCTCGGCA TGAAGCTCGA GAACTGGCCG
CCCGCAGGCC TGGAGAAGTA A
|
|---|
| Protein sequence | MQTALLKPKI IAVEPLGDHH AKVVMEPFER GYGHTLGNAL RRVLLSSMVG YAPTEVTIAG
VVHEYSTIDG VQEDVVNLLL NLKGVVFKLH NRDEVTVSLR KEGEGVVTAA DIELPHDVEI
INPGHVIASL SAGGKLDMQI KVEQGRGYVP GNVRKFGDES SKVIGRIVLD ASFAPVRRVS
YAVESARVEQ RTDLDKLVMN IETNGVISPE EAIRQSARIL VDQLSVFAAL EGTESAAEAA
AARAPQIDPI LLRPVDDLEL TVRSANCLKA ENIYYIGDLI QRTENELLKT PNLGRKSLNE
IKEVLASRGL TLGMKLENWP PAGLEK
|
|---|
| |