| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2979 |
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| Symbol | lysA |
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| ID | 1221833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 3211760 |
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| End bp | 3213115 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637239387 |
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| Product | diaminopimelate decarboxylase protein |
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| Protein accession | NP_521100 |
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| Protein GI | 17547698 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.492096 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCCAG CGCAGTCCCG GCCAGCCGCT GATTCCGTTC TTCCGCTGTC TTTCTCAACC
GGCGTCGCAG TGCGGCGCCC TGATGGTTTC CTGTTCATGT CCGAGTCCCT GATCCGCCAG
GACGGCGCCC TGATGATCGA AGGCGTCGCG CTCGAGGCGA TTGCCGCCCG GTTCGGCACG
CCCACCTACG TCTATTCGCG CGCCGCCCTG ACCGCCAACT ACCGCGCCTA CGCGGCCGCC
TGCGAGGGCC GCAACGCGCG CGTGCAGTAC GCCATGAAGG CCAACTCCAA CCTGGCGGTG
CTGCAGATCT TCGCGCAACT GGGCGCCGGC TTCGACATCG TCTCGGGCGG GGAACTGCGG
CGCGTGCTGG CCGCCGGAGG CAAGGCCGCC GACGTGGTGT TCTCGGGGGT GGGCAAGACC
GCCGACGAGA TGCGCCTGGC GCTCGAAGCC GGTGTCGCCT GCTTCAACGT CGAATCGATC
CCCGAGCTGC ACCGGCTCAA CGAGGTGGCC GGCTCGCTGG GCAAGACCGC GCCGGTGTCG
CTGCGCGTCA ACCCGGACGT GGATGCCAAG ACCCACCCGT ACATCTCCAC CGGCCTGAAG
GGCAACAAGT TCGGCGTCGC GTTCGATGAA GTCCTGCCGA CCTACCGCGC GGCCGCGGCC
ATGCCGAACC TGCGCGTGGT CGGCATCGAC TGCCATATCG GTTCGCAGAT CACCGAGGTC
TCGCCGTACC TGGACGCGAT CGACAAAGTG CTCGACGTGG TGGCCCGGCT CGACGCCGAA
GGCATCCGCC TGTCGCACAT CGATGTGGGC GGCGGCCTGG GCATCACCTA TACCGACGAG
ACGCCGCCGG ACATCACCGC CTTCGCCCGC ACGCTGCTGG ACCGCATCGA GCAGCGCGGC
TTCGGTGACC GCACCGTGCT GTTCGAGCCC GGCCGCTCGC TGGTCGGCAA TGCCGGCCTG
CTGCTGACGC GGGTCGAATT CCTCAAGCCC GGCGCGGCCA AGAACTTCTG CATCGTCGAT
GCGGCCATGA ACGACCTGGC CCGCCCGGCA ATGTACGAGG CGTACCACCA CATCGTGCCG
GTGCGCGAGC GCGGCGGCGC GCCGACCGTC TACGACATCG TCGGCCCGGT CTGCGAATCG
GGCGACTGGC TCGGCCGCGA CCGCGCGCTC GACGCGCAGC CGGGCGATCT GCTGGCGATC
CTGTCGGCGG GCGCCTACGG CTTCACCATG AGCTCGAACT ACAACACCCG CGGCCGCGCG
GCCGAAGTCA TCGTCGACGG CGACCGGGTA CACGTGGCAC GCGAGCGCGA GCGCTTCGAA
GACCTGATCC GCGGCGAGCA GCTGCTGTCG GCCTGA
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| Protein sequence | MPPAQSRPAA DSVLPLSFST GVAVRRPDGF LFMSESLIRQ DGALMIEGVA LEAIAARFGT
PTYVYSRAAL TANYRAYAAA CEGRNARVQY AMKANSNLAV LQIFAQLGAG FDIVSGGELR
RVLAAGGKAA DVVFSGVGKT ADEMRLALEA GVACFNVESI PELHRLNEVA GSLGKTAPVS
LRVNPDVDAK THPYISTGLK GNKFGVAFDE VLPTYRAAAA MPNLRVVGID CHIGSQITEV
SPYLDAIDKV LDVVARLDAE GIRLSHIDVG GGLGITYTDE TPPDITAFAR TLLDRIEQRG
FGDRTVLFEP GRSLVGNAGL LLTRVEFLKP GAAKNFCIVD AAMNDLARPA MYEAYHHIVP
VRERGGAPTV YDIVGPVCES GDWLGRDRAL DAQPGDLLAI LSAGAYGFTM SSNYNTRGRA
AEVIVDGDRV HVARERERFE DLIRGEQLLS A
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