Gene RSc2973 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2973 
SymbolpilO 
ID1221827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3205797 
End bp3206462 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content63% 
IMG OID637239381 
Productfimbrial type-4 assembly membrane transmembrane protein 
Protein accessionNP_521094 
Protein GI17547692 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATGG CTCTCTCGAC CGAACTCTCG CTGGAAGAAC TGGTTGGCCA ATTCCGTGGC 
CTGAACCTCA ACGAGCCGGA AACGTGGCAA CTGGCGCCGC GCATCCTGTT CATGATCCTC
GCGGCCGTGC TGGTGGTCGT GCTTGGCTGG CAGTTTTACT GGAGCGGCAA GCTGGACGAG
CGCGACGCCA AGCGCACCGA GCAGGAGCAA CTGAAATCCG CATACCAGTC CAAGCTGGCC
CAGGTGGTCA ATCTAGAGGC ACTGCGCAAG CAGAAGATCG AGGTGGAGCG CCGCGTCGCC
AAGCTTGAAC TGCAACTGCC GAACCGGACC GAGATGGACG CGCTGCTGGC CGACGTCAAC
CATGCCGGCA TCGCGCGGGG GCTGACTTTC GATCTGTTCC GTCCCCAGTC CGCCGTGGTC
AAGCCGTACT ACGCCGAGAT TCCGGTCTCG GTGAAGGTCA ACGGCCGCTA TCACGACATG
GCGCTGTTTG CCGCCGATGT GGCAGCGCTG TCGCGGATCG TCACGCTGAG GAACATTGCG
CTGACCGGCA ACAAGGACGG CAGCATGGTG ATGGAAGCGC GCGCCGAAGC CTACCGTGCG
CTCGACCCGG ATGAGCAGGC CGCGCAGCGC AAGGCTGCCG CCGTCGTCAA GGGAGACGCC
AAATGA
 
Protein sequence
MTMALSTELS LEELVGQFRG LNLNEPETWQ LAPRILFMIL AAVLVVVLGW QFYWSGKLDE 
RDAKRTEQEQ LKSAYQSKLA QVVNLEALRK QKIEVERRVA KLELQLPNRT EMDALLADVN
HAGIARGLTF DLFRPQSAVV KPYYAEIPVS VKVNGRYHDM ALFAADVAAL SRIVTLRNIA
LTGNKDGSMV MEARAEAYRA LDPDEQAAQR KAAAVVKGDA K