Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2973 |
Symbol | pilO |
ID | 1221827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 3205797 |
End bp | 3206462 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637239381 |
Product | fimbrial type-4 assembly membrane transmembrane protein |
Protein accession | NP_521094 |
Protein GI | 17547692 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3167] Tfp pilus assembly protein PilO |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATGG CTCTCTCGAC CGAACTCTCG CTGGAAGAAC TGGTTGGCCA ATTCCGTGGC CTGAACCTCA ACGAGCCGGA AACGTGGCAA CTGGCGCCGC GCATCCTGTT CATGATCCTC GCGGCCGTGC TGGTGGTCGT GCTTGGCTGG CAGTTTTACT GGAGCGGCAA GCTGGACGAG CGCGACGCCA AGCGCACCGA GCAGGAGCAA CTGAAATCCG CATACCAGTC CAAGCTGGCC CAGGTGGTCA ATCTAGAGGC ACTGCGCAAG CAGAAGATCG AGGTGGAGCG CCGCGTCGCC AAGCTTGAAC TGCAACTGCC GAACCGGACC GAGATGGACG CGCTGCTGGC CGACGTCAAC CATGCCGGCA TCGCGCGGGG GCTGACTTTC GATCTGTTCC GTCCCCAGTC CGCCGTGGTC AAGCCGTACT ACGCCGAGAT TCCGGTCTCG GTGAAGGTCA ACGGCCGCTA TCACGACATG GCGCTGTTTG CCGCCGATGT GGCAGCGCTG TCGCGGATCG TCACGCTGAG GAACATTGCG CTGACCGGCA ACAAGGACGG CAGCATGGTG ATGGAAGCGC GCGCCGAAGC CTACCGTGCG CTCGACCCGG ATGAGCAGGC CGCGCAGCGC AAGGCTGCCG CCGTCGTCAA GGGAGACGCC AAATGA
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Protein sequence | MTMALSTELS LEELVGQFRG LNLNEPETWQ LAPRILFMIL AAVLVVVLGW QFYWSGKLDE RDAKRTEQEQ LKSAYQSKLA QVVNLEALRK QKIEVERRVA KLELQLPNRT EMDALLADVN HAGIARGLTF DLFRPQSAVV KPYYAEIPVS VKVNGRYHDM ALFAADVAAL SRIVTLRNIA LTGNKDGSMV MEARAEAYRA LDPDEQAAQR KAAAVVKGDA K
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