| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2956 |
|---|
| Symbol | |
|---|
| ID | 1221810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3184945 |
|---|
| End bp | 3185910 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637239364 |
|---|
| Product | ABC transporter ATP-binding protein |
|---|
| Protein accession | NP_521077 |
|---|
| Protein GI | 17547675 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.513437 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCA TCGAAATCGC TGACGTCCGC AAGCGCTACA AGTCGTTGCA AGCGCTCAAG
GGCGTGAGCC TGTCCGTTGA GCAGGGCGAG TTTTTCGGTC TGCTGGGCCC GAACGGCGCG
GGCAAGACCA CGCTGATCTC GATCCTCGCG GGTCTGAATC GCGCCGATTC CGGTCAGGTG
CGCGTGCTCG GCCACGATGT GGTGTCCGAC TACCGGATGG CGCGCCGCAT GCTGGGCGTG
GTGCCGCAGG AGCTGGTGTT CGATCCGTTC TTCTCTGTGC GCGAGACGCT GCGGCTGCAA
TCGGGCTACT TCGGCCTGAC CCGGAACGAC GACTGGATCG ACGAGGTGAT GGCCAACCTC
GACCTGACCT CCAAGGCGGA CGCCAACATG CGTGCCCTGT CCGGCGGCAT GAAGCGCCGC
GTGCTGGTGG CGCAGGCGCT GGTGCACCGC CCGCCGGTGA TCGTGCTCGA TGAGCCGACC
GCCGGCGTGG ACGTCGAACT GCGCCAGACG CTGTGGAAGT TCATCGCGCG CCTGAACCGC
GAGGGCCACA CCGTCGTGCT GACCACGCAC TACCTGGAAG AGGCGGAATC GCTGTGCGAC
CGCATCGCCA TGCTCAAGTT CGGCGAGGTG GTGGCGCTGG ACCGCACCGC CAACCTGCTG
TCGCAGTTCG CCGGGCTGCA GCTCGTGCTG GGCTTTGCCC GCGGAGCACT GCCGGCGTCG
CTGGAAGGGC TGCGCATGCC GGGCAATCAC GGTGAGCGCG GCGTGCGGCT GCGCCTGTCG
GGCTACGGCG AAGTCGAGCA GATTCTTTCC ACCTGTCGCC AGGCCGGCTG TGAGATCGAC
GACATGGAGA TCGCCAAGGC CGACCTGGAA GACGTGTTCG TGCAGATCAT GCGGCGCGAG
GGCGGCATGC CCGCCGCGCC GGGCGTGCCG GCGATTCCCG ATTCCGCGCT GGAGCCTGCC
GCATGA
|
|---|
| Protein sequence | MKAIEIADVR KRYKSLQALK GVSLSVEQGE FFGLLGPNGA GKTTLISILA GLNRADSGQV
RVLGHDVVSD YRMARRMLGV VPQELVFDPF FSVRETLRLQ SGYFGLTRND DWIDEVMANL
DLTSKADANM RALSGGMKRR VLVAQALVHR PPVIVLDEPT AGVDVELRQT LWKFIARLNR
EGHTVVLTTH YLEEAESLCD RIAMLKFGEV VALDRTANLL SQFAGLQLVL GFARGALPAS
LEGLRMPGNH GERGVRLRLS GYGEVEQILS TCRQAGCEID DMEIAKADLE DVFVQIMRRE
GGMPAAPGVP AIPDSALEPA A
|
|---|
| |