| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2938 |
|---|
| Symbol | |
|---|
| ID | 1221792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 3169854 |
|---|
| End bp | 3171665 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637239346 |
|---|
| Product | putative transmembrane ABC transporter protein |
|---|
| Protein accession | NP_521059 |
|---|
| Protein GI | 17547657 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.880644 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTCCC TGACGCACGA CCGTGCCGCC GCATCGCAAG CCATTCCGCA ACGCTCGCCC
TGGACGCGCG TGGGACAAGC TTTGCCGCGC GGCGTGGTCA TCCTGCTCAC CGCGCTGGCG
ATCTTCACGC CGCTGGCGCT GATCTTCTAC CAGAGCTTCC TCTCCGCGCC GTTCTTCATG
CCCGACGCGC TGGCGGGGCT CGATGCGTAT CGCTTCATCT TCACCGATCC GGACTTCTGG
CACGCGTTCG AGAAATCCAC CGCGCTGGCC TTCGGGCTGG CGGTGATCTC GGTGCCGCTG
GGCGGCATCC TGGCCTTCCT GATGGTGCGC TCCGACCTGC CGGGCCGCCG CATCATCGAG
CCGATGCTGA TGATCCCGGT GTTCGTCTCG CCGATGGTGC TGGCGTTCGG CTATGTGGTG
TCGGCCGGTC CGGTCGGCTT CTATACGATC TGGTTCAAGC AGCTGTTCGG CGGCGCGCCG
TGGAACGTGT ATTCGTTCAC CAGCATCATC ATCATCGCCG GGCTCACGCA CGTGCCGCAC
GTGTATCTGT ACGTGTCGTC GGCGCTGCGC AGCCTGGGTT CCGATGTGGA GGAAGCCGCG
CGCATCTCGG GGGCATCGCC GCTGTCGGTG GCGCTCAATG TGAGCCTGCC GATGGTGCGG
CCGGCGCTGC TGTACGCCGC CGTGCTGGTG ATCTTCCTGG GCTTCGAAGT GTTCGGCCTG
GTGCTGGTGC TGGGCGACCC GGAAGGCCAC CTGGTGCTGG CGACGTACCT GTACAAGCTG
ACCAACAAGC TGGGCACGCC GGCCTACCAC CTGATGGCGG CCGTGGCGGT CTGCCTGGTG
ATGGTGACCT TCCCGCTGGT GCTGCTGCAA CGCTACATGC TGCGCTCGGC CAACCGCTTC
GTCACCGTCA AGGGCAAGGT CACGCGCAGC CGTCCGCTGC CGCTCGGCAA GTGGCGCTGG
CCGGCGTGGG CGGTGGTGGT GCTGTGGTTC TTCGTGACGG TGATCGTGCC GCTGTCTGGC
ATCGCGCTGC GCGCCTTCGT GTCGAACTGG GGCGAAGGCG TGTCGCTGAT GGAGGCGATC
TCGACCACGG CGTTCCACCA GATCTTCGAG CAGCCGCAGT TCCTGCGGGC GATCATCAAC
ACCGTGCTGA TCGGCGTGAT CGGCGGCGCG CTGGCGGTGG GCTGCTACAC CTGCATCGGC
CTGGCCATGC ACCGCAAGCC GGACGGCTGG ACACGCGTCC TGGATTACAG CGTGCTGGTG
CCGCGCGCGA TTCCCGGTCT GCTGGCCGGC CTGGCGTTCC TGTGGGTGTT CCTGTTCGTG
CCGAACTGGA TCGAGACCGC GCTGACCGAC AGCAGCGTGC CCTTCGCCGG CTGGATGATC
GAGCACGTGG TGCCGGTCCT GCGCAATCTG CGCAGCACGA TCTTCAGCGT GTGGATCGCT
TACTCGGTGG TGTGGATGGC CTACGGCCTG CGGCTGATCT CGGCCGCGCT GCTGCAGGTC
GGCCCCGAGC TGGAGGAAGC CGCCCGCTCG GTCGGCGCCT CGCGCGCCCG CACCACGCGC
GACGTGACCG TGCCGCTCAC GCGCTACGGC CTGCTCGGCG CCTGGCTGCT GATCTTCCTG
ATTTTCGAGC GGGAATACTC GACCGGCGTG TACCTGCTGT CGCCGGGCAC CGAGACCATC
GGCTCGATGC TGGTTTCCCT GTGGGCGGGC GGCGCCATCG ACATCGTCGC TGCGCTGTCC
TTCGTCAACA TTGTGCTGGT GGCCGTGGGC CTCGGCATTG CACTGCGTTT CGGAGTGAAG
CTCCATGATT GA
|
|---|
| Protein sequence | MRSLTHDRAA ASQAIPQRSP WTRVGQALPR GVVILLTALA IFTPLALIFY QSFLSAPFFM
PDALAGLDAY RFIFTDPDFW HAFEKSTALA FGLAVISVPL GGILAFLMVR SDLPGRRIIE
PMLMIPVFVS PMVLAFGYVV SAGPVGFYTI WFKQLFGGAP WNVYSFTSII IIAGLTHVPH
VYLYVSSALR SLGSDVEEAA RISGASPLSV ALNVSLPMVR PALLYAAVLV IFLGFEVFGL
VLVLGDPEGH LVLATYLYKL TNKLGTPAYH LMAAVAVCLV MVTFPLVLLQ RYMLRSANRF
VTVKGKVTRS RPLPLGKWRW PAWAVVVLWF FVTVIVPLSG IALRAFVSNW GEGVSLMEAI
STTAFHQIFE QPQFLRAIIN TVLIGVIGGA LAVGCYTCIG LAMHRKPDGW TRVLDYSVLV
PRAIPGLLAG LAFLWVFLFV PNWIETALTD SSVPFAGWMI EHVVPVLRNL RSTIFSVWIA
YSVVWMAYGL RLISAALLQV GPELEEAARS VGASRARTTR DVTVPLTRYG LLGAWLLIFL
IFEREYSTGV YLLSPGTETI GSMLVSLWAG GAIDIVAALS FVNIVLVAVG LGIALRFGVK
LHD
|
|---|
| |