Gene RSc2932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2932 
Symbol 
ID1221786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3161952 
End bp3163163 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content65% 
IMG OID637239340 
ProductHTRA-like serine protease signal peptide protein 
Protein accessionNP_521053 
Protein GI17547651 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGCGCC GCTTCTGGCT GTTTTTCGCA CAGGCTGTGA CTGTCGTTCT CGCGGTATGG 
TTTGTGATCG CCACCCTCAA ACCCGAGTGG TTGCAGCGCG GCAAGGTGGC TGTGCAATCC
GGCTCGCCCA TCGTCGCGCT CAAGGAAGTC GCGCCACTGG GCCATAGCGG CACCACCAGC
AATTCCTACG CGGAAGCCGC CAAGGTGGCG ATGCCCGCGG TGGTCAACAT CTTCAGCAGC
AAGAACGCCC CCAAGCGCAA CAACCCGCAG GCCAATGCGG ACCCGTGGTT CCGCTTCTTC
TTCGGGGACC GCCTGCCCGA GCAGCGCCAG GAACCGACGG CCAGCCTGGG CTCCGGCGTC
ATCGTCAGCC CGGAAGGCTA CATTCTAACG AACCATCATG TAGTGGACGG CGCCGACGAG
ATCGAAGTCG CGCTGACAGA CGGCCGCAAG GCCAATGCCA AAGTGGTCGG CACGGATCCG
GAAACCGACC TCGCCGTGCT CAAGATCAGC CTGACCAATC TCCCCGCCAT CACGCTCGGG
CGCCTGGAGA ACGTACGCGT CGGCGATGTG GTGCTGGCCA TCGGCAACCC GTTCGGCGTC
GGCCAGACCG TGACGATGGG GATCGTGTCG GCGCTGGGCC GCAGCCACCT CGGCATCAAC
ACCTTCGAGA ACTTCATCCA GACCGACGCA GCCATCAACC CCGGCAACTC GGGCGGTGCC
CTGGTCGACG CCGAAGGCAA CCTGCTCGGC ATTAACACGG CCATCTACTC GCGCTCGGGA
GGATCGCTCG GCATCGGCTT CGCAATTCCC GTGTCGCTGG CCAAGCAGGT GATGGAATCG
ATCATCTCGA CCGGCAGCGT GGTGCGCGGC TGGATCGGCG TCGAGCCGCA GGACGTGACA
CCGGAGATCG CCGAATCGTT TGGCCTGTCG CGCAAGGATG GTGCCCTGAT TGCCGCGGTC
GTCCAGGGTG GCCCCGCCGA TCGAGCCGGC CTGCGCCCGG GCGACATCCT CATCAACGTC
AACGGCGAAT CGATCCAGGA CACCACGGCC TTGCTGAACA GCATTGCCCA GCTCAAGCCA
AGCACGGAAG CCAAGGTGAC CGTGTCACGC AAAGGCAAGC CCGTTGAACT GACCATCATG
GTCGGGAAAC GCCCGCCTCC GGTCCGTCGC AATGTGCCGA TGCCCTCGCC CGAAGACGAG
CAGCCGCAGT AG
 
Protein sequence
MLRRFWLFFA QAVTVVLAVW FVIATLKPEW LQRGKVAVQS GSPIVALKEV APLGHSGTTS 
NSYAEAAKVA MPAVVNIFSS KNAPKRNNPQ ANADPWFRFF FGDRLPEQRQ EPTASLGSGV
IVSPEGYILT NHHVVDGADE IEVALTDGRK ANAKVVGTDP ETDLAVLKIS LTNLPAITLG
RLENVRVGDV VLAIGNPFGV GQTVTMGIVS ALGRSHLGIN TFENFIQTDA AINPGNSGGA
LVDAEGNLLG INTAIYSRSG GSLGIGFAIP VSLAKQVMES IISTGSVVRG WIGVEPQDVT
PEIAESFGLS RKDGALIAAV VQGGPADRAG LRPGDILINV NGESIQDTTA LLNSIAQLKP
STEAKVTVSR KGKPVELTIM VGKRPPPVRR NVPMPSPEDE QPQ