| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2932 |
|---|
| Symbol | |
|---|
| ID | 1221786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 3161952 |
|---|
| End bp | 3163163 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637239340 |
|---|
| Product | HTRA-like serine protease signal peptide protein |
|---|
| Protein accession | NP_521053 |
|---|
| Protein GI | 17547651 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGCC GCTTCTGGCT GTTTTTCGCA CAGGCTGTGA CTGTCGTTCT CGCGGTATGG
TTTGTGATCG CCACCCTCAA ACCCGAGTGG TTGCAGCGCG GCAAGGTGGC TGTGCAATCC
GGCTCGCCCA TCGTCGCGCT CAAGGAAGTC GCGCCACTGG GCCATAGCGG CACCACCAGC
AATTCCTACG CGGAAGCCGC CAAGGTGGCG ATGCCCGCGG TGGTCAACAT CTTCAGCAGC
AAGAACGCCC CCAAGCGCAA CAACCCGCAG GCCAATGCGG ACCCGTGGTT CCGCTTCTTC
TTCGGGGACC GCCTGCCCGA GCAGCGCCAG GAACCGACGG CCAGCCTGGG CTCCGGCGTC
ATCGTCAGCC CGGAAGGCTA CATTCTAACG AACCATCATG TAGTGGACGG CGCCGACGAG
ATCGAAGTCG CGCTGACAGA CGGCCGCAAG GCCAATGCCA AAGTGGTCGG CACGGATCCG
GAAACCGACC TCGCCGTGCT CAAGATCAGC CTGACCAATC TCCCCGCCAT CACGCTCGGG
CGCCTGGAGA ACGTACGCGT CGGCGATGTG GTGCTGGCCA TCGGCAACCC GTTCGGCGTC
GGCCAGACCG TGACGATGGG GATCGTGTCG GCGCTGGGCC GCAGCCACCT CGGCATCAAC
ACCTTCGAGA ACTTCATCCA GACCGACGCA GCCATCAACC CCGGCAACTC GGGCGGTGCC
CTGGTCGACG CCGAAGGCAA CCTGCTCGGC ATTAACACGG CCATCTACTC GCGCTCGGGA
GGATCGCTCG GCATCGGCTT CGCAATTCCC GTGTCGCTGG CCAAGCAGGT GATGGAATCG
ATCATCTCGA CCGGCAGCGT GGTGCGCGGC TGGATCGGCG TCGAGCCGCA GGACGTGACA
CCGGAGATCG CCGAATCGTT TGGCCTGTCG CGCAAGGATG GTGCCCTGAT TGCCGCGGTC
GTCCAGGGTG GCCCCGCCGA TCGAGCCGGC CTGCGCCCGG GCGACATCCT CATCAACGTC
AACGGCGAAT CGATCCAGGA CACCACGGCC TTGCTGAACA GCATTGCCCA GCTCAAGCCA
AGCACGGAAG CCAAGGTGAC CGTGTCACGC AAAGGCAAGC CCGTTGAACT GACCATCATG
GTCGGGAAAC GCCCGCCTCC GGTCCGTCGC AATGTGCCGA TGCCCTCGCC CGAAGACGAG
CAGCCGCAGT AG
|
|---|
| Protein sequence | MLRRFWLFFA QAVTVVLAVW FVIATLKPEW LQRGKVAVQS GSPIVALKEV APLGHSGTTS
NSYAEAAKVA MPAVVNIFSS KNAPKRNNPQ ANADPWFRFF FGDRLPEQRQ EPTASLGSGV
IVSPEGYILT NHHVVDGADE IEVALTDGRK ANAKVVGTDP ETDLAVLKIS LTNLPAITLG
RLENVRVGDV VLAIGNPFGV GQTVTMGIVS ALGRSHLGIN TFENFIQTDA AINPGNSGGA
LVDAEGNLLG INTAIYSRSG GSLGIGFAIP VSLAKQVMES IISTGSVVRG WIGVEPQDVT
PEIAESFGLS RKDGALIAAV VQGGPADRAG LRPGDILINV NGESIQDTTA LLNSIAQLKP
STEAKVTVSR KGKPVELTIM VGKRPPPVRR NVPMPSPEDE QPQ
|
|---|
| |