| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2889 |
|---|
| Symbol | |
|---|
| ID | 1221742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3115680 |
|---|
| End bp | 3117902 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637239296 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_521010 |
|---|
| Protein GI | 17547608 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1289] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.777719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTACG TACACGATCC GCGCACCTTC CTCTACAGCC ACTACGTTTC GCGCGGCATC
CGGACCGCCA CCGGCGTGAT CGGCCTGACG CTGCTGGCCC TGCTGGCGAT GGACCTGCAG
GGCGCCATGG TGGTGTCGAT CGGCGCGCTG TGCACCAGCC AGATGGACCT GCCCAGCCCG
CTGCGGCACA AGTTCAACGA ACTGCTGGCG TGCGTGCTGC TGACCACGCT GGTGACCTTC
ATCGTGGCGG TGACGACGCC GTACGCGATC CTGCCGGCGG TGATCGTGGT GGTCAGCTTC
CTGGCGGGGC TGATGGCGGT GTACGGCAAC AAGACGCTGT CGCTGCAGTT CGCGGCGCTG
TTCGTGATGA CGCTCACCTT CACCGAGGCG TTCGCCTTGC GCGAGGCGCT GGAGCACACC
GCCCAGTTTT TCCTCGGCGC GGCCGGCTAC ATGGCCTTTG CGATGGCGGT GGCGTGGGGC
CAGCGGCGCC GCATCAAGGA GCAGGTGCTG GCCGAATGCC TGTACGAACT GGCCATCTAT
GTCGAGCGCA AGGCCGGCTT CTACGATACC GCGCTCGATT TCGATGCGCA GTTCGACGCG
CTGGTGCGCC AGCAGATCTC GGTGGCCGAC AAGCAGCAGC TCGCGCGCGA TTTCGTCTTC
CGCGACAACC GCGATAACGG CGACACCGGC GACGGCCGCC TGGTGCAGAT CCACATGCGC
ATGCTGGACC TGTACGAATA CCTGCTGTCG ACCAACACCG ATTACCCGCT GCTGCGTCAG
TGGCTGGCCG ACGCCGAGAT CATGCGGCTG CTGCGCGACA GTATCGAGCG GATGCGGCTG
GACCTCGAAG CGCTGGCCTA CGCCGTCGGC CGCGACCGGC CGTCGCCCAC GCCGATGCCG
TACGACAAGG AGATGGCCGC CATCGATGCC GCGCTCGACG AGCTGCAGCA CGGCCACCAC
GCGATTCCGC TGGAAGCCAT CGCCGCGCTG GAGGAGTCGG TCGCGACCGT GCGCGGCGCG
ATCCGCCTGA TGGCGCAGCT GCACGCCGCC ACCGCCACGC CGGTGGCGCT GTCCTCCGTT
CTGCTGCGGC CGGACATGAC GCCCTTCCTG ACGCGGCAGC AATATGAGCT GCGGCTGGTG
CTGGACGCCT TCAACTGGCG CTCGCCGACC CTGCGCTTCG CCCTGCGCAC GGCCATGGCG
GTGGCCGCCG GGCTGTGGAT CGCCGACCAC CTGCCGTACG CCTCGCACGG CTACTGGGTG
TTGCTGACCA TCGTGGTGAT CCTCAAGCCG ACCTTCAGCA TGACGCGCCA GCGCAATGTC
GACCGGGTGC TGGGCACGCT GATCGGCTGC GTGATCGCCG CCGTGCTGCT GCGCTACGTG
CATTCGACGT GGATTCTGCT GGGCGTGCTG TACCTGTCGA CGGCCGCCAG CGCCGCTTTC
GTCACCGTGC GCTACCGCTA CACGGCGGCG GCGGCGGCGG TGCAGGTGCT CATCCAGATC
AACCTGTTGC TGCCGGGCAG CAAGGGCGCC ATCGGCGAAC GGCTGGTCGA CACGCTGCTC
GGCGCGGCCA TCGCCACCGC CTTCAGCTAC GTGCTGCCGG CCTGGGAATA CCGCAACCTG
CCCAAGCTGG TGGACGACGT GCTGCGCACC AACCGGCGCT TCATCGAGTC CGCGCGCGAT
CTGCTGCTCG GCTCGCCCAA GGACGACTTC GCCTACCGCG TGCAGCGCAA GCAGTTCATG
GATGCGCTGA CCGGGCTGAT CGCCGCCTTC GCCCGCATGC TGAACGAGCC CAAGAGCCGG
CACCGGGCGG TCGACAACCT GAACCGCTTC ATCGTGCAGA ACTACCTGGT CGCCGCGCAT
GTGGCGGCGG TGCGCATCCT GGTGCGCCAG CGCGGGCAGG AGCTCGACGC AGCCGATACG
CACGCCCTGA TCGAACAGAC CGTCGAGTCC GCGCTGGAGA GCTTGGCGCG CGCCAAGGAA
CGCTTCGACC AGGCCGTCCA CGAAGGCGGC TGGGGCGTGC GCCCGCGTGA CACGCAGGAG
CTGGGCGCGG CCGAATTCGC CGACCAGTCG GCGCGCTCGC GCATGATCGA TGCCGCCACG
CATCCCGATT CGCTGTCGGC CATGCACCTG CTGGAGCGTC GCCTGCAGGC GCTGCGTGCG
GATACCGCGA AGATCGCGCT GCGCTGCGGC GCGCTGGGGC GAGCGCTGCG TGTGGCGGAT
TGA
|
|---|
| Protein sequence | MDYVHDPRTF LYSHYVSRGI RTATGVIGLT LLALLAMDLQ GAMVVSIGAL CTSQMDLPSP
LRHKFNELLA CVLLTTLVTF IVAVTTPYAI LPAVIVVVSF LAGLMAVYGN KTLSLQFAAL
FVMTLTFTEA FALREALEHT AQFFLGAAGY MAFAMAVAWG QRRRIKEQVL AECLYELAIY
VERKAGFYDT ALDFDAQFDA LVRQQISVAD KQQLARDFVF RDNRDNGDTG DGRLVQIHMR
MLDLYEYLLS TNTDYPLLRQ WLADAEIMRL LRDSIERMRL DLEALAYAVG RDRPSPTPMP
YDKEMAAIDA ALDELQHGHH AIPLEAIAAL EESVATVRGA IRLMAQLHAA TATPVALSSV
LLRPDMTPFL TRQQYELRLV LDAFNWRSPT LRFALRTAMA VAAGLWIADH LPYASHGYWV
LLTIVVILKP TFSMTRQRNV DRVLGTLIGC VIAAVLLRYV HSTWILLGVL YLSTAASAAF
VTVRYRYTAA AAAVQVLIQI NLLLPGSKGA IGERLVDTLL GAAIATAFSY VLPAWEYRNL
PKLVDDVLRT NRRFIESARD LLLGSPKDDF AYRVQRKQFM DALTGLIAAF ARMLNEPKSR
HRAVDNLNRF IVQNYLVAAH VAAVRILVRQ RGQELDAADT HALIEQTVES ALESLARAKE
RFDQAVHEGG WGVRPRDTQE LGAAEFADQS ARSRMIDAAT HPDSLSAMHL LERRLQALRA
DTAKIALRCG ALGRALRVAD
|
|---|
| |