Gene RSc2855 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2855 
Symbol 
ID1221703 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3072456 
End bp3073625 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content65% 
IMG OID637239257 
Productputative outer membrane porin signal peptide protein 
Protein accessionNP_520976 
Protein GI17547574 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAT CGCTGCTTGC GATGGCAGTG CTGGGCGCGT TTGCAGGTGC AGCGCATGCC 
CAATCCAGTG TGACGCTGTA CGGTGTGGTC GACGCCAACG TCGAGTACGT CAACCATGAA
CAAAACGTGA CATCGGCGGG GATCGCCATC CCGGGCAGCG GATCGCGCGT GGCAATGCAG
GCGGGCGGCC TGTCGTCCAA CCGCTGGGGC CTGCGCGGCG TGGAAGACAT CGGCGGCGGC
CTGAAGGGCC TGTTCGTGCT GGAATCCGGC TTCGGCATGG ATACGGGCAC GCTGCAGCAA
GGTGGCCGCC TGTTCGGCCG GCAGGCGTTC GTGGGCTTGC AGGGCAACTG GGGCAAGATC
ACGCTGGGCC GCCAGTACAC CACGATCTTC GACATGATGG CGAACTTCTC GCCGAGCGGC
TATGCCACCC AGTACGAACC GGTGGTCGGC CTGCTGGGCC CGAACTTCCG CGAAGACAAC
GTGATCAAGT ACACCGGCCT GTTCGGCCCG GTGACGGTCG AGGGCCACTG GGCATTCGGC
GAACGCGCCG GCAGCCAGAC GGCCAACTCG GCCTACGGCC TGGGCGCCAA CTACTTCGCC
GGTCCGTTCG GGCTCGGTGT CGCCTACGAC GAAGTGAAGG TGCTGACCGC GGCCGAAGCA
CTGGGCGGCG CCGGCAACGA GTACGCCCGC GACAAGCGCG CCGCCATTGC GGCCAGCTAT
ACGGTGGGCC CGGTCAAGCT GATGGGCGGC TACCGCTACG GCAAGACCGA CACGGCATCG
AGCGGCGCCA CGCTCGCCCT GCTGCCGCAC CGCGACGACC TGTACTGGAT CGGCGTGAAC
TACCAGGCGA CGCCGGCCCT GGGCTTCACG CTGTCGTACT ACTACGACAA CATCAAGGAA
GCGACCATCG GCACCACGAC GGTCAATCCG CGCAAGCCGC AGCAGTTGAA CTTCATCGCC
GATTACAACT TCTCCAAGCG TACCGACGTG TATTTCACGG CGGCCTATTC GCGCAATGCC
TCGCTCAACT GGGACTCGAT CGGTTATGCG ACGACGGCGA GCGGGCAGTT GTCGATCGGT
TACCTGCCGG CCGCTTCGCA GACGTACTTC ATCACGCCGG ATGCCAGCAA CCAGCTGGGC
GCGGCCATCG GTATCCGCCA CAAGTTCTGA
 
Protein sequence
MKKSLLAMAV LGAFAGAAHA QSSVTLYGVV DANVEYVNHE QNVTSAGIAI PGSGSRVAMQ 
AGGLSSNRWG LRGVEDIGGG LKGLFVLESG FGMDTGTLQQ GGRLFGRQAF VGLQGNWGKI
TLGRQYTTIF DMMANFSPSG YATQYEPVVG LLGPNFREDN VIKYTGLFGP VTVEGHWAFG
ERAGSQTANS AYGLGANYFA GPFGLGVAYD EVKVLTAAEA LGGAGNEYAR DKRAAIAASY
TVGPVKLMGG YRYGKTDTAS SGATLALLPH RDDLYWIGVN YQATPALGFT LSYYYDNIKE
ATIGTTTVNP RKPQQLNFIA DYNFSKRTDV YFTAAYSRNA SLNWDSIGYA TTASGQLSIG
YLPAASQTYF ITPDASNQLG AAIGIRHKF