Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2855 |
Symbol | |
ID | 1221703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 3072456 |
End bp | 3073625 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637239257 |
Product | putative outer membrane porin signal peptide protein |
Protein accession | NP_520976 |
Protein GI | 17547574 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAT CGCTGCTTGC GATGGCAGTG CTGGGCGCGT TTGCAGGTGC AGCGCATGCC CAATCCAGTG TGACGCTGTA CGGTGTGGTC GACGCCAACG TCGAGTACGT CAACCATGAA CAAAACGTGA CATCGGCGGG GATCGCCATC CCGGGCAGCG GATCGCGCGT GGCAATGCAG GCGGGCGGCC TGTCGTCCAA CCGCTGGGGC CTGCGCGGCG TGGAAGACAT CGGCGGCGGC CTGAAGGGCC TGTTCGTGCT GGAATCCGGC TTCGGCATGG ATACGGGCAC GCTGCAGCAA GGTGGCCGCC TGTTCGGCCG GCAGGCGTTC GTGGGCTTGC AGGGCAACTG GGGCAAGATC ACGCTGGGCC GCCAGTACAC CACGATCTTC GACATGATGG CGAACTTCTC GCCGAGCGGC TATGCCACCC AGTACGAACC GGTGGTCGGC CTGCTGGGCC CGAACTTCCG CGAAGACAAC GTGATCAAGT ACACCGGCCT GTTCGGCCCG GTGACGGTCG AGGGCCACTG GGCATTCGGC GAACGCGCCG GCAGCCAGAC GGCCAACTCG GCCTACGGCC TGGGCGCCAA CTACTTCGCC GGTCCGTTCG GGCTCGGTGT CGCCTACGAC GAAGTGAAGG TGCTGACCGC GGCCGAAGCA CTGGGCGGCG CCGGCAACGA GTACGCCCGC GACAAGCGCG CCGCCATTGC GGCCAGCTAT ACGGTGGGCC CGGTCAAGCT GATGGGCGGC TACCGCTACG GCAAGACCGA CACGGCATCG AGCGGCGCCA CGCTCGCCCT GCTGCCGCAC CGCGACGACC TGTACTGGAT CGGCGTGAAC TACCAGGCGA CGCCGGCCCT GGGCTTCACG CTGTCGTACT ACTACGACAA CATCAAGGAA GCGACCATCG GCACCACGAC GGTCAATCCG CGCAAGCCGC AGCAGTTGAA CTTCATCGCC GATTACAACT TCTCCAAGCG TACCGACGTG TATTTCACGG CGGCCTATTC GCGCAATGCC TCGCTCAACT GGGACTCGAT CGGTTATGCG ACGACGGCGA GCGGGCAGTT GTCGATCGGT TACCTGCCGG CCGCTTCGCA GACGTACTTC ATCACGCCGG ATGCCAGCAA CCAGCTGGGC GCGGCCATCG GTATCCGCCA CAAGTTCTGA
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Protein sequence | MKKSLLAMAV LGAFAGAAHA QSSVTLYGVV DANVEYVNHE QNVTSAGIAI PGSGSRVAMQ AGGLSSNRWG LRGVEDIGGG LKGLFVLESG FGMDTGTLQQ GGRLFGRQAF VGLQGNWGKI TLGRQYTTIF DMMANFSPSG YATQYEPVVG LLGPNFREDN VIKYTGLFGP VTVEGHWAFG ERAGSQTANS AYGLGANYFA GPFGLGVAYD EVKVLTAAEA LGGAGNEYAR DKRAAIAASY TVGPVKLMGG YRYGKTDTAS SGATLALLPH RDDLYWIGVN YQATPALGFT LSYYYDNIKE ATIGTTTVNP RKPQQLNFIA DYNFSKRTDV YFTAAYSRNA SLNWDSIGYA TTASGQLSIG YLPAASQTYF ITPDASNQLG AAIGIRHKF
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