| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2758 |
|---|
| Symbol | araF |
|---|
| ID | 1221605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2969920 |
|---|
| End bp | 2970915 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637239159 |
|---|
| Product | L-arabinose ABC transporter periplasmic-binding protein |
|---|
| Protein accession | NP_520879 |
|---|
| Protein GI | 17547477 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.630408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.800518 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGC AACGACGCGG TACGTTCCGG GCCATCGCGG CCGCCACTGT GTTCGCCATC
GCCGGCGGAT TTGTCCATGC GGCCGAAGAG GTGAAGATCG GCTTCCTGGT CAAGCAGCCG
GAGGAGCCGT GGTTCCAGGA TGAATGGAGG TTCGCCGACC AGGCCGCCAA GGAGAAGGGC
TTCAAGCTGG TCAAGATCGG CGTGCCCAGC GGCGGCGAAG TGCTGACCGC CATCGACAAC
CTCGGCGCGC AGCACGCGCA GGGCTTCGTG ATCTGCGTGC CCGACGTGAA GCTCGGCCCG
GCCGTGGTGG CCAAGGCCAG GCAGAACAAC CTCAAGCTGA TGACGGTGGA CGACCGCCTG
GTCGACGGCG GCGGCAAGCC GATCGAAGCG GTGCCGCACA TGGGCATCTC GGCGACCAGG
ATCGGCGAGC AGGTGGGTGA GGCCATCGCG CAGGAGATGA AGAAGCGCGG CTGGAACCCG
TCGGAAGTGG GCGCCATCCG CATCGCGTAC GATCAGCTGC CGACCGCCAG GGAGCGCACC
GATGGCGCCG TGGCCGCGCT CGCCAAGGCC GGCTTTCCTG CCGCCAATGT GCTGACCAGC
CCGCAGGCCA AGACCGATAC GGAAGCCGCC TTCAACGCGG CCGATATCAC GCTGACCAAG
AACCCGCGCT TCAAGCACTG GATCGCCTTC GGCCTGAACG ACGAGGCGGT GCTGGGCGCC
GTGCGCGCCG CGGAAGGGCA TGGCATCAAG GCGGCCGACA TCATCGGCGT GGGCATCGGC
GGCAGCCAGT CGGCGCTCAA CGAGTTCGCC AAGCCGGAGA AGACGGGCTT CTTCGGCACC
GTGCTGATCA GCCCCAAGCG CCACGGCTAC GAGACCTCGA TGAACATGTA CAGCTGGATC
ACCGCCAGCA AGGCACCCGA GCCGCTGATC CTGACCAGCG GCCGCCTGAT GACGCGCGAG
AACGAGAAGG CCGTGCGCCA GGAGATGGGC CTCTGA
|
|---|
| Protein sequence | MNQQRRGTFR AIAAATVFAI AGGFVHAAEE VKIGFLVKQP EEPWFQDEWR FADQAAKEKG
FKLVKIGVPS GGEVLTAIDN LGAQHAQGFV ICVPDVKLGP AVVAKARQNN LKLMTVDDRL
VDGGGKPIEA VPHMGISATR IGEQVGEAIA QEMKKRGWNP SEVGAIRIAY DQLPTARERT
DGAVAALAKA GFPAANVLTS PQAKTDTEAA FNAADITLTK NPRFKHWIAF GLNDEAVLGA
VRAAEGHGIK AADIIGVGIG GSQSALNEFA KPEKTGFFGT VLISPKRHGY ETSMNMYSWI
TASKAPEPLI LTSGRLMTRE NEKAVRQEMG L
|
|---|
| |