| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2726 |
|---|
| Symbol | |
|---|
| ID | 1221573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2931981 |
|---|
| End bp | 2933147 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637239127 |
|---|
| Product | multidrug ABC transporter transmembrane protein |
|---|
| Protein accession | NP_520847 |
|---|
| Protein GI | 17547445 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.874339 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGG CCATGGAGCA GCACCAAGAC ATGGAGCGTC CCACCCATCA CGGTGGCGCG
GGCACAGCGC CCGCTCAACC CGCCAGGCGC CTGCGCGGCC GCCCCAGGCG GGTCGCGATG
GGCATCGCCG CCCTCGCGCT GCTGGGCGCG GCGGGCGGGT TGGCCCACTA CGAACTGCGC
GGCAAGTACG TCGAGGACAC GGACGATGCC TACATCCAGG CCGACATCGT CACGGTGGCG
CCCAAGGTCT CGGGCTATGT CGAGCGGGTC GATGTCGCCA ACAACCAGGA GGTCCGGGCC
GGGCAGCGCC TGCTGCGCAT CGACCCGCGC GAGTACGCGG CCCAGCTGGC GCAGTACCAG
GCCCAGGTGG AGGCGGCCAA TGCCAGCGCC GACAACGCCC GCGCCCAGTT GGCGACGCAG
AAGGCCTCCA TCGCCCAGGC CCAGGCGCAA TTGCAGTCCG CCGAACACGA TGCGCAGTTC
ACCGCCGCGC AGACGCAGCG GTACGCATCG CTGGTCGCCT CGGGCGCGGA AACGCGCGAC
CGGCTGAGCA CCCTGCAGAA CCAGGCGGCG CAGGCCCGCG CGAACGCGCA GGCACAGCGC
GCGGCCCTGA CCAAGGCAAC ACTGGAGATC GCCGCGCTCC AGGCCCAGCT GCGGCAAGCC
GAGGCGCAGG CGAAAACGGC GCGCGCGCAG GCAGCGGTGG CCGAGGTCAA CCTGGCCGCG
ACCGAGCTGC GCGCCAGCAC CGATGGCCGC GTCGGCGACA GCCAGGTCCG CGCCGGGCAG
TTCGTGTCCG CCGGCACGCG CCTGATGTCG GTCGTGCCCA TGCACCTCTA CATCACCGCC
AACTTCAAGG AAACGCAGCT GGGCCGCATG CGCATCGGCC AACCGGTGCA CATCCACGTC
GATGCGTTCC CCGACGAAGC GATCGAGGGG CACGTCGAAA GCCTGTCCCC CGGCACCGGC
GCGCAGTTCT CGCTGCTGCC GCCGCAGAAC GCCACCGGCA ACTTCATCAA GATCGTGCAG
CGCGTGCCGG TGCGGATCGC GCTCGACGTG ACCGACCGGC TCAAGCCGCT GCTGGCGGCC
GGCATGTCGG TCACGGTCGA TGTCGATACG CTCGCGCCGG TCCGGCCCGC GGCGCACCCG
CAGCCGGGCA GCGGAGCCCT TCTGTGA
|
|---|
| Protein sequence | MTEAMEQHQD MERPTHHGGA GTAPAQPARR LRGRPRRVAM GIAALALLGA AGGLAHYELR
GKYVEDTDDA YIQADIVTVA PKVSGYVERV DVANNQEVRA GQRLLRIDPR EYAAQLAQYQ
AQVEAANASA DNARAQLATQ KASIAQAQAQ LQSAEHDAQF TAAQTQRYAS LVASGAETRD
RLSTLQNQAA QARANAQAQR AALTKATLEI AALQAQLRQA EAQAKTARAQ AAVAEVNLAA
TELRASTDGR VGDSQVRAGQ FVSAGTRLMS VVPMHLYITA NFKETQLGRM RIGQPVHIHV
DAFPDEAIEG HVESLSPGTG AQFSLLPPQN ATGNFIKIVQ RVPVRIALDV TDRLKPLLAA
GMSVTVDVDT LAPVRPAAHP QPGSGALL
|
|---|
| |