| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2716 |
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| Symbol | secF |
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| ID | 1221563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 2922556 |
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| End bp | 2923524 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637239117 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | NP_520837 |
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| Protein GI | 17547435 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.141872 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTTTT TCCGCATCCG CCGCGACATT CCGTTCATGA AGCACGCGTT GGCCTTCAAC
GCCGTGTCGT TCCTGACGTT CCTCGCCGCC GTCTTCTTCC TGTTCCACAA CGGGCTGCAT
CTGTCGGTGG AATTCACAGG CGGCACCGTG ATGGAAGTCG CCTACACCCA GGCCGCCGAC
CTGCCGAAGG TCCGCGCCGA CGTCGAGAAG CTCGGCTACG CCGATGCCCA GGTGCAGAAC
TTCGGCACCT CGCACGACGT GATGATCCGC CTGCCGCTCA AGAACGGCCC GGACGGCAAG
CCGATCGCCT CGGCCGTGCA GAGCCAGCAG GTGATGTCGT CGCTGATCGC CACCACGCCG
GACGTCAAGC TGCAGCGCGT GGAGTTCGTC GGCCCGCAAG TCGGCAAGGA ACTGGCGACC
GACGGCCTGC TGGCGCTGCT GTTCGTGGTG ATCGGCATCG TGATCTACCT GTCGATCCGC
TTCGAATGGA AGTTCGCGGT GGCGGGCATC ATCGCCAACC TGCACGACAT CGTGATCATC
CTGGGCTTCT TCGCCTTCTT CCAGTGGGAG TTCTCGCTGT CGGTGCTGGC GGCGGTGCTG
GCGGTGCTGG GCTACTCGGT CAACGAATCG GTGGTGATCT TCGACCGGAT CCGCGAAGCC
TTCCGCAAGT ACCGCAAGAT GAACACGCAC GAGGTGATCG ACCACGCCAT CACCAGCACC
ATCTCGCGGA CCATCATCAC CCACGGCTCG ACCGAGATGA TGGTGCTGTC GATGCTGGTG
TTCGGCGGCC CGACGCTGCA CTACTTCGCG CTGGCGCTGA CCATCGGCAT CCTGTTCGGC
ATCTATTCGT CGGTGTTCGT GGCGGCCGCG CTGTGCATGT GGCTCGGCGT CAAGCGCGAA
GACCTGGTCA AGGGCGAGAA GAAGACCACC GGCCCGACGG ACGATCCGAA CTTCGGCGCG
CAGGTCTGA
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| Protein sequence | MEFFRIRRDI PFMKHALAFN AVSFLTFLAA VFFLFHNGLH LSVEFTGGTV MEVAYTQAAD
LPKVRADVEK LGYADAQVQN FGTSHDVMIR LPLKNGPDGK PIASAVQSQQ VMSSLIATTP
DVKLQRVEFV GPQVGKELAT DGLLALLFVV IGIVIYLSIR FEWKFAVAGI IANLHDIVII
LGFFAFFQWE FSLSVLAAVL AVLGYSVNES VVIFDRIREA FRKYRKMNTH EVIDHAITST
ISRTIITHGS TEMMVLSMLV FGGPTLHYFA LALTIGILFG IYSSVFVAAA LCMWLGVKRE
DLVKGEKKTT GPTDDPNFGA QV
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