Gene RSc2715 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2715 
SymbolsecD 
ID1221562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2920598 
End bp2922478 
Gene Length1881 bp 
Protein Length626 aa 
Translation table11 
GC content67% 
IMG OID637239116 
Productpreprotein translocase subunit SecD 
Protein accessionNP_520836 
Protein GI17547434 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.177706 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCT ATCCGCTCTG GAAATACCTT GTGATCCTGG TGGCGCTCGC CATCGGGTTC 
CTCTATACGC TGCCGAACTT CTTCGGTGAA GCGCCCGCCG TCCAGGTGTC GTCGGGCAAG
GCCACCGTCA GGGTCGACCT GGCGACGCAA AAGCAGGTCG AAGACCTCCT CGCCGCCGCC
AACCTGAAGC CGAACGGCGT GTTCTTCGAC ATGAACGGCA CCTCGGGCAG CGTGCGCGTG
CGCTTTGCCG ACACCGACAC GCAGCTCAAG GCCAAGGATG CGCTGGCGCG CGGCCTGAAC
AGCGACCCGA ACGACCCGAC CTACATCGTC GCGCTGAACC TGCTGTCGGG TTCGCCGCGC
TGGCTGACCG CCATCCATGC CCTGCCGATG TTCCTGGGCC TGGACCTGCG CGGCGGCGTG
CACTTCCTGC TGCAGGTCGA CATGAACGGC GCGCTGACCA AGAAGCTCGA CTCGCTGGCC
GGCGATATCC GTACCCAGCT GCGCGACAAG GGCGTGCGCC ACAGCGGCAT CGAGCGCAGC
GGCACGACCA TCAGCATCAA GTTCACCAAC CCCGACGAAG CCGACCGCGC CCGCGGCCTG
CTGGCCGACA GCGCCCGCGA GCTGGCCTTC ACGGTCGACA AGACCGCCGA CGGCGCCACG
CTCACCGGTA CCTTCACCGC CGCGGCAATG AAGGAAGTCC AGGACAACGC CGTCAAGCAG
AACGTCGTCA CGCTGCACAA CCGCGTCAAC GAGCTCGGCG TGTCCGAGCC GGTGATCCAG
CAGCAGGGCC CGGACCGCAT CGTGGTGCAG TTGCCCGGCG TGCAGGACAC CGCCAAGGCC
AAGGACATCA TCGGCCGCAC CGCCACGCTG GAAGCCCGCC TGGCCGACCC GAACGCCACC
GGCATTCCGC GTGCGACCGA TCCGGTGCCG CTGGGTGACG AGCTGTTCAC GCAAGGCCGC
GGCGCGCCGG TGCTGCTGCA GAAGCAGGTG ATCTTCACCG GCGACCGCAT CAACAGCGCC
TCGGCCGGCT TCGACCAGAA CCACAACCCC TCGGTCGACA TCACGCTCGA CGGCCAGGGC
GGCCGCATGC TGCGCGACGT CTCGCGCGAC AACATCGGCA AGCGCATGGG CATCGTGCTG
TTCGAGAAGG GCAAGGGCGA GGTGCTGACC GTCGCCACCA TCCAGTCCGA ACTGGGCTCG
CGCTTCCAGA TCACCGGCAT CGGCTCGGTG GAATCGGCCT CCGACCTGGC GCTGCTGCTG
CGCGCGGGCT CCCTGGCCGC GCCGATGGAG ATCATCGAAG AGCGCACCAT CGGCCCGTCG
CTGGGCGCCG ACAACATCAA GAAGGGCTTC AATTCGGCCG CGTACGGCTT CGCCGCCATC
TCGGTGTTCA TGGTGCTGTA CTACATGCTG TTCGGCGCGT TCTCGGTGGT GGCGCTGGGC
GTGAACGTGT TCCTGCTGAT CGCCATCCTG TCGATGCTGC AGGCCACCCT CACCCTGCCC
GGCATCGCGG CCATCGCGCT GGCGCTGGGC ATGGCGATCG ACGCCAACGT GCTGATCAAC
GAGCGCGTCC GCGAAGAGCT GCGCAACGGC GCGTCGCCGC AGATGGCGAT CGCCGCCGGC
TTCGAGCGCG CCTGGGCGAC CATCCTGGAC TCGAACGTGA CCACGCTGAT CGCCGGCCTG
GCGCTGCTGG CCTTCGGCTC GGGCCCGGTG CGCGGCTTCG CCGTGGTGCA CTGCCTGGGC
ATCCTGACGT CGATGTTCTC GGCGGTGTTC TTCAACCGCA GCCTGGTCAA CCTCTGGTAC
GGCCGCAAGA AGAAGCTGCA GAGCCTCGCC ATCGGCCAGG TGTGGAAACC CGCCGGCACC
GAAAGTCCGG CCAAGCAGTA A
 
Protein sequence
MNRYPLWKYL VILVALAIGF LYTLPNFFGE APAVQVSSGK ATVRVDLATQ KQVEDLLAAA 
NLKPNGVFFD MNGTSGSVRV RFADTDTQLK AKDALARGLN SDPNDPTYIV ALNLLSGSPR
WLTAIHALPM FLGLDLRGGV HFLLQVDMNG ALTKKLDSLA GDIRTQLRDK GVRHSGIERS
GTTISIKFTN PDEADRARGL LADSARELAF TVDKTADGAT LTGTFTAAAM KEVQDNAVKQ
NVVTLHNRVN ELGVSEPVIQ QQGPDRIVVQ LPGVQDTAKA KDIIGRTATL EARLADPNAT
GIPRATDPVP LGDELFTQGR GAPVLLQKQV IFTGDRINSA SAGFDQNHNP SVDITLDGQG
GRMLRDVSRD NIGKRMGIVL FEKGKGEVLT VATIQSELGS RFQITGIGSV ESASDLALLL
RAGSLAAPME IIEERTIGPS LGADNIKKGF NSAAYGFAAI SVFMVLYYML FGAFSVVALG
VNVFLLIAIL SMLQATLTLP GIAAIALALG MAIDANVLIN ERVREELRNG ASPQMAIAAG
FERAWATILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCLG ILTSMFSAVF FNRSLVNLWY
GRKKKLQSLA IGQVWKPAGT ESPAKQ