Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2715 |
Symbol | secD |
ID | 1221562 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 2920598 |
End bp | 2922478 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637239116 |
Product | preprotein translocase subunit SecD |
Protein accession | NP_520836 |
Protein GI | 17547434 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.177706 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGCT ATCCGCTCTG GAAATACCTT GTGATCCTGG TGGCGCTCGC CATCGGGTTC CTCTATACGC TGCCGAACTT CTTCGGTGAA GCGCCCGCCG TCCAGGTGTC GTCGGGCAAG GCCACCGTCA GGGTCGACCT GGCGACGCAA AAGCAGGTCG AAGACCTCCT CGCCGCCGCC AACCTGAAGC CGAACGGCGT GTTCTTCGAC ATGAACGGCA CCTCGGGCAG CGTGCGCGTG CGCTTTGCCG ACACCGACAC GCAGCTCAAG GCCAAGGATG CGCTGGCGCG CGGCCTGAAC AGCGACCCGA ACGACCCGAC CTACATCGTC GCGCTGAACC TGCTGTCGGG TTCGCCGCGC TGGCTGACCG CCATCCATGC CCTGCCGATG TTCCTGGGCC TGGACCTGCG CGGCGGCGTG CACTTCCTGC TGCAGGTCGA CATGAACGGC GCGCTGACCA AGAAGCTCGA CTCGCTGGCC GGCGATATCC GTACCCAGCT GCGCGACAAG GGCGTGCGCC ACAGCGGCAT CGAGCGCAGC GGCACGACCA TCAGCATCAA GTTCACCAAC CCCGACGAAG CCGACCGCGC CCGCGGCCTG CTGGCCGACA GCGCCCGCGA GCTGGCCTTC ACGGTCGACA AGACCGCCGA CGGCGCCACG CTCACCGGTA CCTTCACCGC CGCGGCAATG AAGGAAGTCC AGGACAACGC CGTCAAGCAG AACGTCGTCA CGCTGCACAA CCGCGTCAAC GAGCTCGGCG TGTCCGAGCC GGTGATCCAG CAGCAGGGCC CGGACCGCAT CGTGGTGCAG TTGCCCGGCG TGCAGGACAC CGCCAAGGCC AAGGACATCA TCGGCCGCAC CGCCACGCTG GAAGCCCGCC TGGCCGACCC GAACGCCACC GGCATTCCGC GTGCGACCGA TCCGGTGCCG CTGGGTGACG AGCTGTTCAC GCAAGGCCGC GGCGCGCCGG TGCTGCTGCA GAAGCAGGTG ATCTTCACCG GCGACCGCAT CAACAGCGCC TCGGCCGGCT TCGACCAGAA CCACAACCCC TCGGTCGACA TCACGCTCGA CGGCCAGGGC GGCCGCATGC TGCGCGACGT CTCGCGCGAC AACATCGGCA AGCGCATGGG CATCGTGCTG TTCGAGAAGG GCAAGGGCGA GGTGCTGACC GTCGCCACCA TCCAGTCCGA ACTGGGCTCG CGCTTCCAGA TCACCGGCAT CGGCTCGGTG GAATCGGCCT CCGACCTGGC GCTGCTGCTG CGCGCGGGCT CCCTGGCCGC GCCGATGGAG ATCATCGAAG AGCGCACCAT CGGCCCGTCG CTGGGCGCCG ACAACATCAA GAAGGGCTTC AATTCGGCCG CGTACGGCTT CGCCGCCATC TCGGTGTTCA TGGTGCTGTA CTACATGCTG TTCGGCGCGT TCTCGGTGGT GGCGCTGGGC GTGAACGTGT TCCTGCTGAT CGCCATCCTG TCGATGCTGC AGGCCACCCT CACCCTGCCC GGCATCGCGG CCATCGCGCT GGCGCTGGGC ATGGCGATCG ACGCCAACGT GCTGATCAAC GAGCGCGTCC GCGAAGAGCT GCGCAACGGC GCGTCGCCGC AGATGGCGAT CGCCGCCGGC TTCGAGCGCG CCTGGGCGAC CATCCTGGAC TCGAACGTGA CCACGCTGAT CGCCGGCCTG GCGCTGCTGG CCTTCGGCTC GGGCCCGGTG CGCGGCTTCG CCGTGGTGCA CTGCCTGGGC ATCCTGACGT CGATGTTCTC GGCGGTGTTC TTCAACCGCA GCCTGGTCAA CCTCTGGTAC GGCCGCAAGA AGAAGCTGCA GAGCCTCGCC ATCGGCCAGG TGTGGAAACC CGCCGGCACC GAAAGTCCGG CCAAGCAGTA A
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Protein sequence | MNRYPLWKYL VILVALAIGF LYTLPNFFGE APAVQVSSGK ATVRVDLATQ KQVEDLLAAA NLKPNGVFFD MNGTSGSVRV RFADTDTQLK AKDALARGLN SDPNDPTYIV ALNLLSGSPR WLTAIHALPM FLGLDLRGGV HFLLQVDMNG ALTKKLDSLA GDIRTQLRDK GVRHSGIERS GTTISIKFTN PDEADRARGL LADSARELAF TVDKTADGAT LTGTFTAAAM KEVQDNAVKQ NVVTLHNRVN ELGVSEPVIQ QQGPDRIVVQ LPGVQDTAKA KDIIGRTATL EARLADPNAT GIPRATDPVP LGDELFTQGR GAPVLLQKQV IFTGDRINSA SAGFDQNHNP SVDITLDGQG GRMLRDVSRD NIGKRMGIVL FEKGKGEVLT VATIQSELGS RFQITGIGSV ESASDLALLL RAGSLAAPME IIEERTIGPS LGADNIKKGF NSAAYGFAAI SVFMVLYYML FGAFSVVALG VNVFLLIAIL SMLQATLTLP GIAAIALALG MAIDANVLIN ERVREELRNG ASPQMAIAAG FERAWATILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCLG ILTSMFSAVF FNRSLVNLWY GRKKKLQSLA IGQVWKPAGT ESPAKQ
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