| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2581 |
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| Symbol | trbE |
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| ID | 1221428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2787371 |
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| End bp | 2789821 |
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| Gene Length | 2451 bp |
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| Protein Length | 816 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637238982 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | NP_520702 |
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| Protein GI | 17547300 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TTGCCGAATA CCGCCAGCGG CCCGCCTTGC TGGCCGACTG GCTTCCTTGG
GCCGGGCTGA TCGCACCGGG TGTCGTCTTG AACAAGGACG GCAGTTTCCA GCGCACAGCC
CGTTTCCGTG GTCCCGATCT CGATAGCGCC ACGCAAGGCG AGTTGATCGC CACCACGGCG
CGGCTGAACA ACGCGCTGCG CCGGCTGGGT TCGGGCTGGG CGCTGTTCAT CGAGGCCGAG
CGCCGACCGG CCGCAGACTA CCCGTATTCC GACTTCCCCG AACCACTGTC CTGGCTCGTG
GACGAGGAAC GCCGCGCCGC CTTCGAGGAA TCGGGCAACC ACTTCGAGAG CACCTATCAC
CTGACGCTGG CCTACCTGCC GCCGGAGGAA TCCCGCGCCC GTGCGGCCAA GCTGCTGTAC
GAGCACGCGC CGGGCGATGG CGTGGACTGG CGCGGTCGGC TCGATGCCTT CGTGGCGGAA
ACCGATCGCG TCTTTGACCT GCTCGATGGC GTGATGCCGG AAATCGCCTG GCTGGACGAT
GCTGCGACGC TGACCTATCT GCACGCGACC ATCTCGACGC GGCGCTACCG CGTGGGCGTG
CCGGAAGTGC CGTTTCACCT CGACGCGCTG CTGGCCGATT CCGCCCTGGT CGGCGGCCTC
GCGCCCATGC TGGGCGACCA GCACCTGCGC GTGGTGTCGG TGCGGGGCTT CCCGACATCG
ACCTGGCCGG GCCTGCTGGA CGACCTCAAC CGCCTGGGCT TTGCCTATCG CTGGTCAACC
CGGTTCCTCT GCCTCGACAA AGCGGAGGCG GAAAAGGAGC TGGGCCGCCT GCGCCGCCAA
TGGTTTGCCA AGCGCAAGAA TGTCATCGCG CTGCTGCGCG AAACGATCTT TCAGCAGGAA
TCGCCCTTGG TGGACACGGA TGCCAGCAAC AAGGCGGCCG ACGCCGACGC TGCGTTGCAG
GAGCTGGGCA GCGATCAAGT GGCCTTCGGC TACCTCACCG CCACGGTGAC GGTACTTGAT
GCTGATCCAG CCGTGGCCGA CGAAAAGCTG CGCATGGTGG AGCGCGTGAT TCAGGGCCGC
GGCTTTGTAA CCATCCCCGA AACGCTCAAT GCCGTGGATG CGTGGCTGTC GTCCATCCCT
GGCAACGCCT ATGCCAATGT GCGCCAGCCC ATCGTCTCGA CGTTGAACCT GGCGCACATG
ATGCCGCTGT CGGCGGTGTG GGCCGGCCCG GAGCGCAACA AGCACTTGGA CGGCCCGCCG
GTGATTGTCA CGCGCACTGA CGGCGCAACG CCGTTTCGCT TGGTCACGCA CATCGGCGAC
GTGGGCCACA TGGCCGTGGT CGGCCCGACC GGCATGGGCA AGTCGGCCTT CCTGGCCGTG
CTAGCGATGC AATTCCGGCG CTATCTGCAC TCGCGCATCT TCGTCTTCGA CATGGGCCGC
TCCATGCGCG CCACCATCCT GGGCCTGGGA GGCGAGCACT ACGACCTCGG CGCGGATGGC
GGCATTGCCT TTCAGCCACT CGCGCACATC GACGCAGAGG GCTACCGCAC CTGGGCCGCC
GAATGGGTGG AAGGCCGGCT GCTGCACGAA GGCGTCACCG TCGGCCCGGA CGAGAAGGCC
GGCATCTGGT CGGCGCTCGG CAGTCTGGCC GGTGCGCCCG TGGAGCAGCG CACGATGACC
GGGCTTTCGG TGCTGCTGCA ATCGAACGCG CTGCGCCAGG CACTCGCGCC CTATGTGCTC
GGCGGCGCAC ACGGCAAGCT GCTGGATGCA GACCGCGACC GGCTCGGCAG CGCGGACGTT
CAGTGCTTCG AGATGGAGGA ACTGATGGCC AGCCCCGCCG CCGTGCGGTC GGTGCTGGGC
TACCTGTTTG CCCGCTTCGA TGAACGATTC GACGGTTCGC CCACGCTGCT GATCCTCGAT
GAATCCTGGC TGTTCCTGGA TGACCCGGTA TTTGCCGCAC GCATCCGCCA GTGGTTGAAG
ACGCTGCGCA AGCGCAATGT CAGTGTCGTC TTCGCTACGC AAAGCCTGGC GGATATTCAG
AACTCCAGCA TCGCGGCGGC CATCATCGAA AGCTGCGCGG TTCGGATTTT CTTGCCCAAC
CCGCAGGCGA CCGAACCGCA GATTCGCACG ATCTACGAGG GCTTCGGCCT CAACAGCCGG
CAAATCGAGA TCGTCGCCAC CGCGCAACCC AAGCAGGACT ACTACTACCA ATCGCGCCTC
GGCAATCGCC TGTTCGACCT CGACCTGGGG CCGGTCGTGC TCGCCTTCGC AGGCGCATCC
ACACCGCAAG ACCAACGCGA CATAGAGCGC GTGCTGACGC AGGCCGGCGC TCCCGGCTTC
GCCGGCGCGT GGCTGCGCCA TCGCGGCCTC GATTGGGCCG CCGACCTGCT GCCGTCCTCG
CCGGCGGCAG CTTCTGTCCT TGCTACTCAA CCGCTGGAGG TTTCGCCATG A
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLIAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATTA
RLNNALRRLG SGWALFIEAE RRPAADYPYS DFPEPLSWLV DEERRAAFEE SGNHFESTYH
LTLAYLPPEE SRARAAKLLY EHAPGDGVDW RGRLDAFVAE TDRVFDLLDG VMPEIAWLDD
AATLTYLHAT ISTRRYRVGV PEVPFHLDAL LADSALVGGL APMLGDQHLR VVSVRGFPTS
TWPGLLDDLN RLGFAYRWST RFLCLDKAEA EKELGRLRRQ WFAKRKNVIA LLRETIFQQE
SPLVDTDASN KAADADAALQ ELGSDQVAFG YLTATVTVLD ADPAVADEKL RMVERVIQGR
GFVTIPETLN AVDAWLSSIP GNAYANVRQP IVSTLNLAHM MPLSAVWAGP ERNKHLDGPP
VIVTRTDGAT PFRLVTHIGD VGHMAVVGPT GMGKSAFLAV LAMQFRRYLH SRIFVFDMGR
SMRATILGLG GEHYDLGADG GIAFQPLAHI DAEGYRTWAA EWVEGRLLHE GVTVGPDEKA
GIWSALGSLA GAPVEQRTMT GLSVLLQSNA LRQALAPYVL GGAHGKLLDA DRDRLGSADV
QCFEMEELMA SPAAVRSVLG YLFARFDERF DGSPTLLILD ESWLFLDDPV FAARIRQWLK
TLRKRNVSVV FATQSLADIQ NSSIAAAIIE SCAVRIFLPN PQATEPQIRT IYEGFGLNSR
QIEIVATAQP KQDYYYQSRL GNRLFDLDLG PVVLAFAGAS TPQDQRDIER VLTQAGAPGF
AGAWLRHRGL DWAADLLPSS PAAASVLATQ PLEVSP
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