| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2539 |
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| Symbol | amiC |
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| ID | 1221386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2747322 |
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| End bp | 2748845 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637238940 |
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| Product | N-acetylmuramoyl-L-alanine amidase AMIC precursor protein |
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| Protein accession | NP_520660 |
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| Protein GI | 17547258 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.687203 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGATCA AGCATCTGCC GACCGACCAA CCGGACGATT CCCACCTGCC CAGCCAGGCG
CGCAGGCAAT GGCTGTCGCG CATGGCCCGG GCGGGCGCCG GGACGGTCGT CCTCAGCCTG
GCCGGTCCGC AGATCGCCTT CGGCGCCAAC ATCGTGGCGG TGCGCGTGTG GCCGGCGCAG
GATTACACGC GCGTGACCAT CGAGTCGGAC ATGGCGCTGT CGGCCACGCA CCAGCTGGTG
GCGGACCCGG ACCGCCTGGT TGTCGACATC GACGGCCTTG ACCTGAACCC GACGCTGCGC
GAGCTGGTGG CCAAGATCAC GCCGAACGAT CCGTACATCC GCCAGGTGCG CGTGGGCCAG
AACCGGCCGC GCGTGGTGCG CCTGGTGTTC GACCTGAAGG AGAGCGTCAA TCCGCAGGTG
TTCACGCTGC TGCCGATCGC CGGCTATCGC AACCGGCTGG TGTTCGACCT GTATCCGGCC
AATCCGCTTG ACCCGTTGAT GCAGCTGGTG CGCGCGACCG AAGACAAGCA GCAGCGCTTC
ATCGCCTCGG GCGGCGCGCC GATGCCGGCA CCGGCCGAGG ACGACGATCC CATCGCCGCG
CTGGCGCGCC GCAGCGCCGG CAGCCCGGCG TCCGCGGCCA CGCGGCCGGC CGCGGATGGG
CGTCCGGCGT TGGCCAATCG CGCGCCGTCG CGCAAGCCCG CGTCGCCCGC CGCCGACAAT
CCGCCGGCGC TGGCCAACGC GCCGATGTCG CCGCCGCTGG CGATCGAACC CGAGCCGCCG
GTGCCGCGCG GCGCGGCTGC CGGTCCGCGC ATGCGCCGGC TGCTGACGGT GGCGATCGAT
CCCGGCCACG GCGGCGAAGA CCCGGGCGCC ACCGGCAGCG CCGGCACGCA CGAGAAGGAC
GTGGTGCTGT CGGTCGCCCG CCTGCTGCGC GCCAAGATCG ACGCCCAGCC CAACATGCGC
GCCATGATGA CGCGCGACGC CGACTACTTC GTGCCGCTCA ACGTGCGCGT GCAGAAGGCG
CGCCGCGTGC AGGCCGACCT GTTCGTCTCC ATCCACGCCG ATGCCTTCCT GTCGCCGGAG
GCGAAGGGGG CATCGGTGTT TGCGCTGTCC GAGCGCGGCG CCTCCAGCGC CCAGGCCAAG
TGGCTCGCCA ACAAGGAGAA CGCGGCGGAC ATGATCGGCG GGGCCAACCT GGGCTCCAAG
GATGCGCAGG TCACGCGCGT GCTGCTGGAC CTGTCGACCA CCGCGCAGAT CAGCGATAGC
ATGAAGGTCG GCCGGTCGGT GCTGGAGCAG ATCGGCGGCA TCAACCGCCT GCACAAGGGA
CAGGTCGAGC AGGCCGGGTT TGCGGTGCTG AAGGCGCCGG ACATTCCGTC GATCCTGATC
GAGACGGCGT TCATCAGCAA CCCGGAAGAA GAGTCCAAGC TCACCGACAG CGCCTACCAG
AATCAGCTGG CCGAGGCGAT CCTGCGCGGC ATCCGCGCCT ACTTCGCCAA GAACCCGCCG
CTGTCGCGCA ATCCGGGCGT GTGA
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| Protein sequence | MLIKHLPTDQ PDDSHLPSQA RRQWLSRMAR AGAGTVVLSL AGPQIAFGAN IVAVRVWPAQ
DYTRVTIESD MALSATHQLV ADPDRLVVDI DGLDLNPTLR ELVAKITPND PYIRQVRVGQ
NRPRVVRLVF DLKESVNPQV FTLLPIAGYR NRLVFDLYPA NPLDPLMQLV RATEDKQQRF
IASGGAPMPA PAEDDDPIAA LARRSAGSPA SAATRPAADG RPALANRAPS RKPASPAADN
PPALANAPMS PPLAIEPEPP VPRGAAAGPR MRRLLTVAID PGHGGEDPGA TGSAGTHEKD
VVLSVARLLR AKIDAQPNMR AMMTRDADYF VPLNVRVQKA RRVQADLFVS IHADAFLSPE
AKGASVFALS ERGASSAQAK WLANKENAAD MIGGANLGSK DAQVTRVLLD LSTTAQISDS
MKVGRSVLEQ IGGINRLHKG QVEQAGFAVL KAPDIPSILI ETAFISNPEE ESKLTDSAYQ
NQLAEAILRG IRAYFAKNPP LSRNPGV
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