| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2478 |
|---|
| Symbol | |
|---|
| ID | 1221325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2685556 |
|---|
| End bp | 2687484 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637238879 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_520599 |
|---|
| Protein GI | 17547197 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGACG CCTACAAGAT CGGTGTCACG CTCAGTCTAG TCGATCACGC CACGCCGTCC
ATAGGCAGGA TCATGCGCGG CCTGGCGGCG ACCGAGGCTG AAGCCGCGAA GCTGCAGAAG
CGCTTGGACG GGATCAGGGC AGGTTTTGTC GGAGGGGCGG CATCGATCGC CGCCGGCCTG
ACGCTGGCCG CACCCTTCAA GACCGGCATC GAGCACGCCG AGAAGTTCGA GCGGGCACTG
CTGCGGCTGA AAAACATCGG TGGTATCGAG CCTGCAGTGA TCGCTCGGAT CAGAGCCGAC
GCGCTGGCGG GGAAGTACCC ATCGATGAGC GCTACCGAGA CGGTGGACAG CTTCCGGGAT
CTGCACACGG CTTTTGGCGA GGCGGCGCAC GCCCTGCAGT TCATGCCGCA GTTCGCCAAG
GCCAACGCTG TCAGCAAATG GGTCTATGGC AAGTCGGTGG TCCAAGGTGA GCGGGAAACC
TTGGCGCTGG CCCAGGTGGC CGAGCGCTTG GGAGGCTCCA ACTCGCCCGA GGCGATGGGC
CGAGCCATCG ATCTGGTGGC GCGCGTCCGT GCTGGAACGG GTGGCAATCT CGGCGCGCTG
GATGTGAAGG CTATGGCAAG CACGCTGGGC CCGAATTTCG CCATGATGAG CGCAGAGGGC
ATCGCCAAGC TGACGGCGAT TGGCACTGAG ATTGGCGCAT CCAAGGCCGG CACGGCCACC
AACAGCCTGT TGCAAAACTT CCTGTTTGGT CGCGGCTCCG AGGCGTCGGG CTACTGGATG
CGCAAATACG GGCTGGTCAA TGAGGCCGTC AATGAACGCA ACCTGCGCGA AATGTATGGC
GACAAATGGC GCCAGCATCG CAACAAAGTA ACGGCCGGTG CGGCTATAGG GTCTGACCTT
CTGGCGAAGG ATGTGCCCGA ATGGGTGCAG CGGTACGCTC TGCCGATCCT CAAGGCTCAC
GGCGTCGTCC AGCCTAACGA CTTGGCCATG CTCGCCTCCA TGCTGGCGTC GAATCGCAAG
GGTGCCGAAG ATTTGGCGAT GATGCTTACG CAGATGTCCC GCATCATGAA GGATTTCCAC
CTGGTGCAGG CCTCCAAGGG CGTCGACGAA CAATACGAGG CCGCGAAGGA CAGCCCCGTT
GCAAAGATCG ATACGCTTAA AGCGCGCTGG GAGACCGCCC TGACCAACTT GGGGGAGGGA
GCCCTGCCAG TGGTGGTGCC ATTGGCGGAA AAGCTGGGTA GTGCGCTGAA GCGCTTCAAT
GAGTACGCCG AGAAGAACCC TGGGACGATC GAGCGCATGA CCGATGGTTT CATCGGCCTA
TCCGCTGTGC TGATTGGCGG GGGCGTGATT TCAATGCTCA ACAGCTCTGT CCGCAGCTTC
CGGCTGCTGA CGGATGTGCT GTTTCCAGCG TCGCGCGGGT TGGGTGGTGC GGCTGAGGCG
ACATCCGCGT TGTCCAAAGC GATCGCCATG AAAGAGGTGG GCGGGGCGTT GGGTATTGCC
CGCATCGCTG CAGCGCTCGG CCCGGTCGGG CTCGCCGGCG CATTGATCGC CCTGGGCGCC
GGTGCCATTG CCTTGATTGA CAAAATTACC GAGGCGAACG CCGGCAAGAA CAAGCCGCAC
GGGCGTGGAT TCCTCCCTGA CGAGCCGGAA AAGCCCAAGA CGATGATGGT TCCACTTGGA
CATCGGGGGC GCGGCATCGT CTACGCCGAG GTGCCGGTGG GCTCCTACTC CAACGAGGGG
CACAACCGCG GCGTTACCCC GCCGGCCGGC AGCCAGCAGA CGGTCCAGGT GCACACGCAG
ATCAATGTCG ATGGCCGGAA GGTCGCAGAT GCTGTGACGC GGCACCAGGC GCAGGAAATG
GCCCGCCCGC AGACGGGCCC GAGCACGTTC GATCCTGGCA TGGGCTTGCC GCCACCATCA
TTGAAATAA
|
|---|
| Protein sequence | MFDAYKIGVT LSLVDHATPS IGRIMRGLAA TEAEAAKLQK RLDGIRAGFV GGAASIAAGL
TLAAPFKTGI EHAEKFERAL LRLKNIGGIE PAVIARIRAD ALAGKYPSMS ATETVDSFRD
LHTAFGEAAH ALQFMPQFAK ANAVSKWVYG KSVVQGERET LALAQVAERL GGSNSPEAMG
RAIDLVARVR AGTGGNLGAL DVKAMASTLG PNFAMMSAEG IAKLTAIGTE IGASKAGTAT
NSLLQNFLFG RGSEASGYWM RKYGLVNEAV NERNLREMYG DKWRQHRNKV TAGAAIGSDL
LAKDVPEWVQ RYALPILKAH GVVQPNDLAM LASMLASNRK GAEDLAMMLT QMSRIMKDFH
LVQASKGVDE QYEAAKDSPV AKIDTLKARW ETALTNLGEG ALPVVVPLAE KLGSALKRFN
EYAEKNPGTI ERMTDGFIGL SAVLIGGGVI SMLNSSVRSF RLLTDVLFPA SRGLGGAAEA
TSALSKAIAM KEVGGALGIA RIAAALGPVG LAGALIALGA GAIALIDKIT EANAGKNKPH
GRGFLPDEPE KPKTMMVPLG HRGRGIVYAE VPVGSYSNEG HNRGVTPPAG SQQTVQVHTQ
INVDGRKVAD AVTRHQAQEM ARPQTGPSTF DPGMGLPPPS LK
|
|---|
| |