Gene RSc2442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2442 
SymbolispH 
ID1221289 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2648677 
End bp2649651 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content67% 
IMG OID637238843 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionNP_520563 
Protein GI17547161 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.780862 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACGA CCGAGAACGC TGCGATCGAA CCCGTGACCG GCGCCGACGC CGAAGTCCTG 
CTGGCGCAGC CGCGCGGCTT CTGCGCCGGC GTGGACCGCG CCATCGAGAT CGTCGAGCGC
GCGCTGCAGC GGTTCGGTGC GCCCATCTAC GTGCGCCACG AGATCGTGCA CAACGCCTAC
GTGGTGAGCG ATCTGCGCAG CAAGGGCGCG GTGTTCGTGC AGGAGCTGGA CGACGTGCCG
GTGGGCGGTA CGGTCATCTT CAGCGCGCAC GGCGTGTCGC GCGCCGTTCG CCAGGCCGCC
GAGGCGCGCG GCCTGCGCGT GTTCGATGCG ACCTGCCCGC TGGTGACCAA GGTGCATGTC
GAAGTGTCGA AGATGCGCAC CCAGGGCTTC GAGATCATCA TGATTGGTCA CAAGGGCCAT
CCGGAAGTCG AGGGCACCAT GGGGCAGGCC GACGACGGCA TGCTGCTGGT CGAGTCGGTG
GACGACGTGG CGCGCCTGGC CGTCAAGGAT CCGGCGCGGC TGGCCTACGT TACGCAGACC
ACGCTGTCGG TGGACGAGAC GCAGGAGATC GTCGCGGCGA TCAAGGCGCG CTTTCCTGCC
GTGCACGAGC CCAAGAAGCA GGACATCTGC TATGCCACGC AGAACCGGCA GGACGCAGTC
AAGTTCATGG CGCCGCAGGT CGAGGTCGTG ATCGTGGTCG GCAGTCCGAA CAGCTCGAAC
TCCAACCGGC TGCGCGAGCT GGCCGAAAAG CTGGGCGTGC CCGCCTATAT GGTGGATACC
CCGGAGCAGG TCAGGCCGGA GTGGCTGGCG GGCAAGCGCC GCGTCGGCCT GACGGCGGGG
GCGTCCGCGC CGGAGGAGCT GGCGCAGTCG ATCGTCGATC GCCTGCGCGC ACTCGGTGCG
CGCTCCGTGC GTCCGCTCGA CGGCATCCAG GAAAACATGT CTTTCCCTCT TCCGAGGGGA
CTTCAAATCA ATTGA
 
Protein sequence
MSTTENAAIE PVTGADAEVL LAQPRGFCAG VDRAIEIVER ALQRFGAPIY VRHEIVHNAY 
VVSDLRSKGA VFVQELDDVP VGGTVIFSAH GVSRAVRQAA EARGLRVFDA TCPLVTKVHV
EVSKMRTQGF EIIMIGHKGH PEVEGTMGQA DDGMLLVESV DDVARLAVKD PARLAYVTQT
TLSVDETQEI VAAIKARFPA VHEPKKQDIC YATQNRQDAV KFMAPQVEVV IVVGSPNSSN
SNRLRELAEK LGVPAYMVDT PEQVRPEWLA GKRRVGLTAG ASAPEELAQS IVDRLRALGA
RSVRPLDGIQ ENMSFPLPRG LQIN