Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2442 |
Symbol | ispH |
ID | 1221289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2648677 |
End bp | 2649651 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637238843 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | NP_520563 |
Protein GI | 17547161 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.780862 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACGA CCGAGAACGC TGCGATCGAA CCCGTGACCG GCGCCGACGC CGAAGTCCTG CTGGCGCAGC CGCGCGGCTT CTGCGCCGGC GTGGACCGCG CCATCGAGAT CGTCGAGCGC GCGCTGCAGC GGTTCGGTGC GCCCATCTAC GTGCGCCACG AGATCGTGCA CAACGCCTAC GTGGTGAGCG ATCTGCGCAG CAAGGGCGCG GTGTTCGTGC AGGAGCTGGA CGACGTGCCG GTGGGCGGTA CGGTCATCTT CAGCGCGCAC GGCGTGTCGC GCGCCGTTCG CCAGGCCGCC GAGGCGCGCG GCCTGCGCGT GTTCGATGCG ACCTGCCCGC TGGTGACCAA GGTGCATGTC GAAGTGTCGA AGATGCGCAC CCAGGGCTTC GAGATCATCA TGATTGGTCA CAAGGGCCAT CCGGAAGTCG AGGGCACCAT GGGGCAGGCC GACGACGGCA TGCTGCTGGT CGAGTCGGTG GACGACGTGG CGCGCCTGGC CGTCAAGGAT CCGGCGCGGC TGGCCTACGT TACGCAGACC ACGCTGTCGG TGGACGAGAC GCAGGAGATC GTCGCGGCGA TCAAGGCGCG CTTTCCTGCC GTGCACGAGC CCAAGAAGCA GGACATCTGC TATGCCACGC AGAACCGGCA GGACGCAGTC AAGTTCATGG CGCCGCAGGT CGAGGTCGTG ATCGTGGTCG GCAGTCCGAA CAGCTCGAAC TCCAACCGGC TGCGCGAGCT GGCCGAAAAG CTGGGCGTGC CCGCCTATAT GGTGGATACC CCGGAGCAGG TCAGGCCGGA GTGGCTGGCG GGCAAGCGCC GCGTCGGCCT GACGGCGGGG GCGTCCGCGC CGGAGGAGCT GGCGCAGTCG ATCGTCGATC GCCTGCGCGC ACTCGGTGCG CGCTCCGTGC GTCCGCTCGA CGGCATCCAG GAAAACATGT CTTTCCCTCT TCCGAGGGGA CTTCAAATCA ATTGA
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Protein sequence | MSTTENAAIE PVTGADAEVL LAQPRGFCAG VDRAIEIVER ALQRFGAPIY VRHEIVHNAY VVSDLRSKGA VFVQELDDVP VGGTVIFSAH GVSRAVRQAA EARGLRVFDA TCPLVTKVHV EVSKMRTQGF EIIMIGHKGH PEVEGTMGQA DDGMLLVESV DDVARLAVKD PARLAYVTQT TLSVDETQEI VAAIKARFPA VHEPKKQDIC YATQNRQDAV KFMAPQVEVV IVVGSPNSSN SNRLRELAEK LGVPAYMVDT PEQVRPEWLA GKRRVGLTAG ASAPEELAQS IVDRLRALGA RSVRPLDGIQ ENMSFPLPRG LQIN
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