| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2386 |
|---|
| Symbol | |
|---|
| ID | 1221232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2594104 |
|---|
| End bp | 2594985 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637238786 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_520507 |
|---|
| Protein GI | 17547105 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1354] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000700551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTC CCGCGCAGGA CAAGCTGCCG CTTTCCGTCG AGCTGCCCAG CGTGGCGCCC
GAACAGGATT CCACGCCCGC CCAGATCGAC GGTCTGGCCT TCGCGCGGCT GTACGGCGAG
CCGCTGTTCA AGCTGCCGCA GGACCTCTAC ATCCCGCCCG ATGCGCTGGA GATCTTTCTC
GAAGCCTTCG AAGGACCGCT GGACCTGCTG CTGTACCTGA TCCGCCGCCA GAACTTCAAT
GTGCTGGACA TCCCGATGGC GCAGGTGACG CGGCAATACC TGGCGTACAT CGAGCAGATC
CGCGCGACCA ACCTCGAGCT CGCCGCCGAA TACCTGCTGA TGGCGGCCAT GCTGATCGAG
ATCAAGTCGC GCATGCTGCT GCCGGTCAAG AAGACCGACT CCGGCGAAGA ACCCGAAGAC
CCGCGCGCCG AACTGGTGCG CCGCCTGCTC GAATACGAGC AGATGAAGCT CGCCGCGCAG
AAGCTCGACA CCGTGCCGGT GCTCGGGCGC GACTTCCTGC GCGCGCAGGT CTACATCGAA
CAGAGCCTCG CGCCGCGCTA CCCCGACGTC AACGCCGATG ACCTGCGTGC GGCGTGGGCC
GACGTGCTGC GCCGGGCCAA GCTCACCCAG CACCACAAGA TCTCGCGCGA AGAGCTTTCC
GTGCGCGAGC ACATGAGCCA GATCCTGCGC CGACTGCAGC ACGCGCGGTT CATGGAATTC
ACCGAGCTGT TCGACGACGT CATCCGCTCC GGCAAGGGTG CGCCCATCGT GGTGGTCAAC
TTTGTCGCCA TGCTGGAGCT ATCGCGCGAA TCGCTGCTGG AAATCACCCA GGCCGAACCC
TACGCGCCGA TCTACGTGCG GCTGGCCTAT TCCCCGACCT GA
|
|---|
| Protein sequence | MTTPAQDKLP LSVELPSVAP EQDSTPAQID GLAFARLYGE PLFKLPQDLY IPPDALEIFL
EAFEGPLDLL LYLIRRQNFN VLDIPMAQVT RQYLAYIEQI RATNLELAAE YLLMAAMLIE
IKSRMLLPVK KTDSGEEPED PRAELVRRLL EYEQMKLAAQ KLDTVPVLGR DFLRAQVYIE
QSLAPRYPDV NADDLRAAWA DVLRRAKLTQ HHKISREELS VREHMSQILR RLQHARFMEF
TELFDDVIRS GKGAPIVVVN FVAMLELSRE SLLEITQAEP YAPIYVRLAY SPT
|
|---|
| |