Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2380 |
Symbol | |
ID | 1221226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 2584311 |
End bp | 2584940 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637238780 |
Product | hypothetical protein |
Protein accession | NP_520501 |
Protein GI | 17547099 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.074872 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00369317 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAGCCA AGCTTATTTC CGTCTCGCTG GTCGCGCTGC TGGCCGCCGG CTGTGCCACC GAACAGCAGA ACCAGACCCT GGCGGGCACG GGCGTGGGCG CCGCCGTGGG TGCCGGCATC GGCGCGCTGG TCGGCAACAG CAAGGGCGCG GCCATCGGCG GCGCGCTGGG CGCGGCCGGC GGCGCGGCCG TCGGCTACAA CTGGAACGCG ATCAAGTCCA AGCTGACCGG CGACACGGCC GGCACCGGCA CGCAGATCTC CGAGCAGCCG GACGGCTCGC TCAAGCTGAA CATCCCGAGC CAGGTCTCGT TCGATACCGA CAGCGCCGTG ATCAAGCCGT CTTTCCGCGG CCCGCTGGAC AGCGTGGCGG AAACCCTGAG CCAGCATCCT GAACTGGCCG CCAACGTGGT CGGCCACACC GACAGCACCG GCAACCCGAA CTACAACATG AGCCTGTCGC AGCGCCGGGC CCAGAGCGTG GCCAGCTACC TGACCGACCG CGGCGTGGCC CGCAACCGCA TGTCGGCCGA GGGCCGCGGC CAAACGCAGC CGGTCGGGGA CAACGCCACC GAGGCCGGCC GCGCACAAAA TCGCCGCGTC GAAATTTATT TGAAACCAAT TCAGGGATGA
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Protein sequence | MKAKLISVSL VALLAAGCAT EQQNQTLAGT GVGAAVGAGI GALVGNSKGA AIGGALGAAG GAAVGYNWNA IKSKLTGDTA GTGTQISEQP DGSLKLNIPS QVSFDTDSAV IKPSFRGPLD SVAETLSQHP ELAANVVGHT DSTGNPNYNM SLSQRRAQSV ASYLTDRGVA RNRMSAEGRG QTQPVGDNAT EAGRAQNRRV EIYLKPIQG
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