Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2368 |
Symbol | sodC |
ID | 1221214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2572296 |
End bp | 2572844 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637238768 |
Product | superoxide dismutase Cu-Zn precursor protein |
Protein accession | NP_520489 |
Protein GI | 17547087 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG2032] Cu/Zn superoxide dismutase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0422357 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAC TCGTGATCGG ACTTGCCGCG ATCGGCCTGA TGGCCGGCTG CGCTTCGAAT GCCGGCACCG GCGCCAGCAC CGGCGCACCC GCCGCCGGCA CCTCGGCTTT GGCCACGCTG GCGCCCAAGA GCGGCAGCAA CGTGCAAGGC ACCATCAAGC TGCTGCAGCA AGGCGACAGC CGGGTTGCGA TGGCGGTCGA CATTGCCGGC CTGCCGCCCA ACGGCATGTT CGGCTTCCAT GTACACGAGA AGGGCGACTG CTCCTCGCCG GACGGCATGA GCGCGGGCGG CCACTTCAAC CCGACCGGCC AGCCGCACGG CGATCCGCGC TCCGGCCCGC ACCATGCCGG CGACATCCCG ATGCTGCAGT CCGATGCCAG CGGCAAGGCC GTCGGCTCGA TCGTCCTGAA CGGCGTCACG CTCACGCCCG GCGCCACCAG CCTGGTCGGC CGCGCGGTGA TCGTCCATGC GGGCATGGAC GACTACAAGA CCCAGCCGAC CGGCAACTCC GGCGGGCGCG TCGCTTGCGG CGTGATCGTG GCGAACTGA
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Protein sequence | MKQLVIGLAA IGLMAGCASN AGTGASTGAP AAGTSALATL APKSGSNVQG TIKLLQQGDS RVAMAVDIAG LPPNGMFGFH VHEKGDCSSP DGMSAGGHFN PTGQPHGDPR SGPHHAGDIP MLQSDASGKA VGSIVLNGVT LTPGATSLVG RAVIVHAGMD DYKTQPTGNS GGRVACGVIV AN
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