| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2271 |
|---|
| Symbol | |
|---|
| ID | 1221116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2461185 |
|---|
| End bp | 2462774 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637238670 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_520392 |
|---|
| Protein GI | 17546990 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.237917 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG AATTCCCGCG TGCCGAATCC GCCGATGTCG CACTGCTGCT TGAAGGGACC
TTTCCCTATG TGAGCGGCGG GGTGTCGAGC TGGGTCAACC AGATGATCCG GGCCTTTCCG
GACATCCGCT TCGCCCTCGT CTTCATCGGC AGCCGCCGCG AAGACTACGG CAAGCCGGTC
TACGCCCTGC CCGACAACGT GGTGCACGTG GAGTGCCACT ACCTGTACGA CTTTCCCGCG
CCGCCGCTGG TGCAGGCCAG CGGCGGCGAT ACCCGGGCCT TCGATCGCTC GCGCAAGCTG
CATGACGCGC TGCGCGACCC GGCCAACCAC GGCGAGACCG CCGAGCTGAT CCGCGCCTCG
ATCGCCGACC TGCGCGAGGA CGGCCCGCTG GCCGAGGAGC AGTTCCTCTA CAGCCACCGC
GCCTGGGAGA TGATGACGGA CTACTACCGG CGCTACTGCA CCGACCCGTC GTTCACCGAC
TACTTCTGGA CCGTGCGCAT CATGCACAAG CCGCTGTGGA TGCTGGTGCG CATTGCCGAG
AACCTGATCC CGGTGAAGGT GTTCCACACC ATCTCCACCG GCTACGCGGG GTTCCTGGGC
GCGCTGCTGC GCTACCGCTG GGGACGGCCG CTGCTGGTCT CGGAGCACGG CATCTACACC
AAGGAACGCA AGATCGACCT GTTCCAGAGC CAGTGGATTC GCGACAACCG CAGCATCTTC
GAGAAGGACA TCTCGCAGAT CAGCTATTTC CGCGACCTGT GGGTGCGCTT CTTCGAGACC
ATCGGCCGGG TCTGCTATGA CGCCGCCGAA GACATCATCT CGCTGTACGA GGGCAACCGC
CTGCGGCAAG TGCTCGACGG CGCGCCGGCG CAGAAGACCC GCAACATCCC CAACGGCATC
AACCTGCCGC GCCTGGCCGC GCTGCGCGAC CGGCGCGGGC CCAGCGTGCC GCGCGTGATG
TGCCTGATCG GCCGGGTGGT GCCGATCAAG GACGTGAAGA CGTTCATCCG CGCCATGCTG
ACCATCACGC GCGAGATGCC CGACGCCGAA GGCTGGATCG CCGGCCCGGA AGACGAAGAC
CCCGACTACG CGCAGGAATG CCACAGCCTG GCCGAGAGCC TGGGGCTGGG CGAGCGCATC
AAGTTCCTCG GCTTCCAGAA GATCGACGAT GTGCTGCCCA AGGTCGGGGT GCTGGTGCTG
AGTTCGATCA GCGAGGCGCT GCCGCTGGTG GTGCTGGAAG GGTTTGCCGC CGGCGTGCCG
TCGGTCACCA CCGATGTCGG CTCGTGCCGC CAACTGCTGT TCGGCCTGGA CGGCGACGAC
GCGGCGCTGG GCGCGGCGGG CGCCGTGGTG CGCATCGCCG ACCCGGCCGC GCTGGCCGCC
GAGGTGCTGA ACCTGCTGAG CGACGAGTCC CGCTGGTACG CCGCGCAGGC CGCCGGCATC
GCCCGCGTCG AGCGCTACTA CACGCAGGAG ATGATGGTCG GCAGCTACCG CGAGCTGTAT
GAGCGCCTGC GCGCGCAGCC GGACATGCCC ACCGGGCCGG GCGCCAAGGC CGCCGCCGCG
GCGTGTCCGC ATCACCAGGG AGCGCGCTGA
|
|---|
| Protein sequence | MTDEFPRAES ADVALLLEGT FPYVSGGVSS WVNQMIRAFP DIRFALVFIG SRREDYGKPV
YALPDNVVHV ECHYLYDFPA PPLVQASGGD TRAFDRSRKL HDALRDPANH GETAELIRAS
IADLREDGPL AEEQFLYSHR AWEMMTDYYR RYCTDPSFTD YFWTVRIMHK PLWMLVRIAE
NLIPVKVFHT ISTGYAGFLG ALLRYRWGRP LLVSEHGIYT KERKIDLFQS QWIRDNRSIF
EKDISQISYF RDLWVRFFET IGRVCYDAAE DIISLYEGNR LRQVLDGAPA QKTRNIPNGI
NLPRLAALRD RRGPSVPRVM CLIGRVVPIK DVKTFIRAML TITREMPDAE GWIAGPEDED
PDYAQECHSL AESLGLGERI KFLGFQKIDD VLPKVGVLVL SSISEALPLV VLEGFAAGVP
SVTTDVGSCR QLLFGLDGDD AALGAAGAVV RIADPAALAA EVLNLLSDES RWYAAQAAGI
ARVERYYTQE MMVGSYRELY ERLRAQPDMP TGPGAKAAAA ACPHHQGAR
|
|---|
| |