| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2262 |
|---|
| Symbol | |
|---|
| ID | 1221107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2453602 |
|---|
| End bp | 2454879 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637238661 |
|---|
| Product | D-amino acid dehydrogenase small subunit |
|---|
| Protein accession | NP_520383 |
|---|
| Protein GI | 17546981 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.66021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.350308 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCA CGGTTGTGGG CGCCGGCATC GTCGGCATCA GTACGGCGTA CGCGCTGGCC
CAGGAGGGCC ATCAGGTCAC GCTGGTCGAG CGGAACCCGG GCCCGGGTGA GGGCACCAGC
TATGCCAACG GCGGGCAGCT CAGCTATAGC TATGTGGCGC CGCTGGCCGG GCCGGGCGTG
CTGTCGCATG TGCCGGGCTG GCTGTTGCGG CGCGATTCGC CGCTGCGGCT CAAGCCATCG
CTGGACCCGG TGCTGCTGCG CTGGGGCCTG CGCTTCATTG CCGCGTGCAA CCGCGAACGG
GCCGACCGCA CCACGCGCGA GCTGCTGGCG CTGTCGTTCT ACAGCCGCGC CCGCATGGAG
GCGCTGCGCG CGGCCTCGCC CGATCTGTCC TTCAGCTTTG CGCGGCGCGG CAAGCTGGTG
GTCTACCGTG ATGCCGCGGC CTTTGCGTCG GCCCGTGCCC AGGTCGGCTA CCAGGCGACG
CTCGGCTGCG AGCAGCATGC GCTGTCGGCC GACGAGACCA TCGCCCGGGA GCCCGCGCTG
GCTGGCGCGC GCGGTGCGAT CGTCGGCGCC ATCTACACGC CGGATGAAGA CGTGGCCGAC
TGCCACCAGC TCTGCGTCGG CCTGTTCAAC CGGCTGTGCG CCCTGCCCAA TGTGGCGCTG
CGCTTCAATG CCGGCGCCGA ATCGCTGTGG GTGGAGGGCC GGCGCGTGCG CGGCGTGCGC
ACGGCCCATG AGCCGATCAC CGCCGATGCC GTGGTGGTGG CTGCCGGCGT GGCCAGTGCC
GGACTGCTCG GCCCGTTGCG CATCGACCCG GGCCTGTATC CGCTCAAGGG CTACAGCATC
AGCCTGCCAT TGGGCGAGGG CGGGGCGGGC AGCGATGGCG CACCGGTCGT CAGCGTCACG
GACGCGGCGC GCAAGATCGT CTACGCCCGC ATCGGCCGCA CGCTGCGCGT GGCGGGCATG
GCGGACCTGG TGGGCTGGTC GGACCGGCTC GACCCGCGCC GCGTGCAGAC CCTCTACGAC
GAAACCCGCG CGCTGTTTCC CGCCGCGCTG CGCGCCAGCG ATGCCGGCGC CGATGCCGCG
CCGTGGGCGG GCATGCGGCC GGCGACCCCG ACCGGCGTGC CGGTGGTGGG CCCGTCGCCG
GTGGACGGCC TGTGGCTCAA TGTCGGCCAT GGCGCGCTGG GCTTTACACT GGCCATGGGC
AGCGCCGGCC TGCTGGCCGA CCTGATCGCG CGGCGCGCGC CGGCGATCGC GGCGGCGCCG
TATGCGCTGG CGCGCTAG
|
|---|
| Protein sequence | MQITVVGAGI VGISTAYALA QEGHQVTLVE RNPGPGEGTS YANGGQLSYS YVAPLAGPGV
LSHVPGWLLR RDSPLRLKPS LDPVLLRWGL RFIAACNRER ADRTTRELLA LSFYSRARME
ALRAASPDLS FSFARRGKLV VYRDAAAFAS ARAQVGYQAT LGCEQHALSA DETIAREPAL
AGARGAIVGA IYTPDEDVAD CHQLCVGLFN RLCALPNVAL RFNAGAESLW VEGRRVRGVR
TAHEPITADA VVVAAGVASA GLLGPLRIDP GLYPLKGYSI SLPLGEGGAG SDGAPVVSVT
DAARKIVYAR IGRTLRVAGM ADLVGWSDRL DPRRVQTLYD ETRALFPAAL RASDAGADAA
PWAGMRPATP TGVPVVGPSP VDGLWLNVGH GALGFTLAMG SAGLLADLIA RRAPAIAAAP
YALAR
|
|---|
| |