| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2252 |
|---|
| Symbol | pacF |
|---|
| ID | 1221097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2444630 |
|---|
| End bp | 2445832 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637238651 |
|---|
| Product | beta-ketoadipyl CoA thiolase |
|---|
| Protein accession | NP_520373 |
|---|
| Protein GI | 17546971 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02430] beta-ketoadipyl CoA thiolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00123839 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAG CCTTTATCTG CGACGCCATC CGCACGCCCA TCGGCCGCTA CGGCGGCAGC
CTGTCCGCCG TGCGCGCGGA CGACCTCGGC GCGGTGCCCC TCAAGGCGCT GATGGCGCGC
AACCCGCGGG TCGACTGGTC GGCCATTGAC GACGTGATCT TCGGCTGCGC CAACCAGGCC
GGCGAGGACA ACCGCAACGT GGCGCGCATG TCGGCGCTGC TGGCCGGACT GCCCGACAGC
GTGCCGGGCT CGACCATCAA CCGCCTGTGC GGCTCGGGCA TGGACGCCAC CGGCACCGCC
GCGCGCGCCA TCCGCGCCGG CGAAACCGCG CTGATGATCG CCGGCGGCGT GGAGAGCATG
AGCCGCGCGC CCTTCGTGAT GGGCAAGGCC GCCAGCGCCT TCTCGCGCGA CGCCGCCATG
TACGACACCA CCATCGGCTG GCGCTTCGTC AATCCGCTGA TGCAGGCGCA GTACGGCGTC
GACTCGATGC CCGAGACCGC CGAGAACGTC GCCGCCGACT ACCGGGTCAG CCGCGAAGAC
CAGGATCGCT TCGCGCTGCG CAGCCAGGCC AGCGCCGCGC GCGCGCAGGC CGACGGCACG
CTGGCGCAGG AAATCACGCC GGTGACGATC GCGCAGAAGA AGGGCGATCC GATCGTCGTA
GACCGCGACG AGCATCCGCG CGCGACCACC CTGGAAGCGC TCGCCAGGCT CAAGGGCGTG
GTGCGCCCGG CCGGCACCGT CACGGCCGGC AATGCCTCGG GCGTGAACGA CGGCGCCTGC
GCGCTGCTGC TCGCCAACGA AGAGGCCGCC AAGCGCTTCG GCCTGACACC GCGCGCGCGC
ATCATCGGCA TGGCCACCGC CGGCGTGCCG CCGCGCGTGA TGGGCATCGG CCCGGCGCCG
GCCTCGCAGA AGGTGCTCGG GCAGCTTGGC CTGACGATCG ACCAGATGGA TGTGATCGAG
CTGAACGAAG CGTTTGCCGC GCAAGGCCTG GCGGTGACGC GCCAGCTCGG CCTGGCCGAC
GACGATGCGC GCGTCAACCC GAACGGCGGG GCCATCGCGC TGGGCCACCC GCTCGGCATG
AGCGGCGCGC GCCTGGTGAC CACGGCGATG TACCAACTGC AGCGCACCGG CGGCCGCTAT
GCGCTGTGCA CGATGTGCAT CGGCGTCGGC CAGGGCATCG CGCTGGTGAT CGAACGCGTG
TGA
|
|---|
| Protein sequence | MTEAFICDAI RTPIGRYGGS LSAVRADDLG AVPLKALMAR NPRVDWSAID DVIFGCANQA
GEDNRNVARM SALLAGLPDS VPGSTINRLC GSGMDATGTA ARAIRAGETA LMIAGGVESM
SRAPFVMGKA ASAFSRDAAM YDTTIGWRFV NPLMQAQYGV DSMPETAENV AADYRVSRED
QDRFALRSQA SAARAQADGT LAQEITPVTI AQKKGDPIVV DRDEHPRATT LEALARLKGV
VRPAGTVTAG NASGVNDGAC ALLLANEEAA KRFGLTPRAR IIGMATAGVP PRVMGIGPAP
ASQKVLGQLG LTIDQMDVIE LNEAFAAQGL AVTRQLGLAD DDARVNPNGG AIALGHPLGM
SGARLVTTAM YQLQRTGGRY ALCTMCIGVG QGIALVIERV
|
|---|
| |