| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2249 |
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| Symbol | pcaC |
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| ID | 1221094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2442032 |
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| End bp | 2442427 |
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| Gene Length | 396 bp |
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| Protein Length | 131 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637238648 |
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| Product | putative 4-carboxymuconolactone decarboxylase protein |
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| Protein accession | NP_520370 |
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| Protein GI | 17546968 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
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| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR02425] 4-carboxymuconolactone decarboxylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0833929 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATGAGC GCGATCGCCA CCACGCCGGC ATGCAGGTCA GGCGCGCCGT GCTGGGCGAC
GCTCACGTCG ACCGTGCCAC CGCCGCGCAG ACCGAACTGA CCGCGCCGTT CCAGGACCTC
ATCACCCGCT ACGCCTGGGG CGAGATCTGG ACGCGGCCCG GTCTGCCGCG CCACACGCGC
AGCCTGCTGA CCATCGCGAT GATGGTGGCG CTCAACCGCG ACGGCGAGCT GCGCCTGCAC
CTGCGTGCCG CCGCCAACAA CGGCGTCACG CGCGAAGAGA TCCAGGAAGT GCTGCTGCAG
ACCGCGATCT ACTGCGGCGT GCCGGCGGCC AACCACGCTT TCCACCTGGC GCAGGCGGTG
TTCGCCGACA TGGACGCGGA GGCGGCTGCG AAGTAA
|
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| Protein sequence | MDERDRHHAG MQVRRAVLGD AHVDRATAAQ TELTAPFQDL ITRYAWGEIW TRPGLPRHTR
SLLTIAMMVA LNRDGELRLH LRAAANNGVT REEIQEVLLQ TAIYCGVPAA NHAFHLAQAV
FADMDAEAAA K
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