Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2221 |
Symbol | dxs |
ID | 1221066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2408516 |
End bp | 2410426 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637238620 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | NP_520342 |
Protein GI | 17546940 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTACG AACTTCTGAA CACCATCGAC GCTCCGGCCG AGCTACGCCG CCTGGACCGT CGCCAGCTCG GCACCCTGGC CGATGAGCTG CGCGCCTTCG TGCTCGAATC CGTCGCGCAG ACGGGGGGCC ACCTGTCGTC GAATCTGGGC ACGGTCGAGC TGACCATCGC GCTGCACTAC GTCTTCAACA CGCCGGACGA TCGCATCGTG TGGGACGTCG GTCACCAGAG CTATCCGCAC AAGATCCTGA CCGGCCGCCG CGAGCAGATG GCGACACTGC GCCAACTGGA CGGCATCTCC GGTTTCCCGC GCCGCAGCGA GAGCCCGTAC GACACCTTCG GCACCGCGCA TTCCTCCACC TCGATCTCCG CCGCGCTGGG CATGGCGCTG GGCGCCAAGA CGCAGGGCGA GAACCGCGTC GCCATCGCCG TGATCGGCGA CGGGGCGATG AGCGCGGGCA TGGCCTTCGA GGCGATGAAC AACGCCGGTG TCTATCGAAA CCTGCCGCTG GTGGTGGTGC TCAACGACAA CGACATGTCG ATCTCGCCGC CGGTGGGCGC GCTCAACCGC TACCTGGCGC GGTTGATGAG CGGCCAGTTC TACGCCGCCA CCAAGAAGGG CGTGGAGAAG CTGCTGTCGG TGGCGCCGCC GGTGCTGGAG TTCGCCAAGC GCTTCGAGGA GCACGCCAAG GGCATGCTGG TGCCGGCGAC GATGTTCGAG GAATTCGGCT TCAACTACAT CGGGCCGATC GATGGGCACG ATCTCGAATC CCTGGTGCCG ACGCTGCAGA ACATCCGCCA GCGCGCGCTG GAGGGCGGCC GGCCGCAGTT CCTGCACGTG GTGACCAAGA AGGGGCAGGG CTACAAGCTG GCCGAGGCCG ATCCGATCCT TTATCACGGC CCGGGCAAGT TCAATCCGCA GGAAGGCATC AAGCCCGCCG CGCGCCCGGC CAAGGTGTCC TACACGCAGG TGTTCGGCCA GTGGCTGTGC GACATGGCCG CCGCCGACAA GCGTCTGGTC GGTATCACGC CCGCCATGCG CGAGGGCTCG GGCATGGTGG AGTTCGAGCA GCGCTTCCCC GACCGCTATT ACGACGTCGG CATCGCTGAG CAGCACGCTG TCACCTTCGC CGGTGGCCTG GCGTGCGAGG GCCTCAAGCC GGTGGTCGCC ATCTATTCGA CCTTCCTGCA GCGCGGCTAC GACCAGCTGA TCCACGACGT GGCGCTGCAG AACCTGCCGG TGGTGTTCGC GCTGGACCGC GCGGGCCTGG TCGGCGCGGA CGGCGCGACG CATGCCGGCG CCTACGACAT GGCCTACCTG CGCTGCATCC CCAACATGAT GGTGATGGCG CCGGCCGACG AGAACGAGTG CCGCCAGCTG CTCAGCACGG CGTTCGCCCA GGACTGCCCG ACGGCGGTGC GCTATCCACG CGGTGCCGGC ACGGGCGTGG TGGTGCAGCC GACGCTGGAG CCGCTGCCGG TGGGCAAGGC CGAGGTGCGC CGCGCGTCCA CCGCACCGGC GGGCCAGCGC GTGGTGATCC TGGCTTTCGG TTCGATGGTC GCGCCGGCCG CCGCCGCCGC CGAGCGCCTG GATGCCACCG TGGTCAACAT GCGCTTCGTC AAGCCGCTGG ACGCGGCCTG CGTGCTGGAG ATGGCACGCA CCCACGATTA TGTGGTCACA GTGGAAGAGG GTTGCGTGAT GGGCGGCGCC GGCAGCGCCT GCCTGGAGGC GCTTGCCGCC GCCGGGGTGG CCACGCCGGT GCTGCAGTTG GGCTTGCCCG ACCGCTTCGT CGATCACGGC GATCATGCGG CGCTGCTGGC GCTGTGCGGA CTGGACGCCA ACGGCATCCT GGCGTCGATC CGCGAGCGCT TTGCGGTGCA GCCGCGCGCG GTGCAACCGC GCGTGGCGTA A
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Protein sequence | MTYELLNTID APAELRRLDR RQLGTLADEL RAFVLESVAQ TGGHLSSNLG TVELTIALHY VFNTPDDRIV WDVGHQSYPH KILTGRREQM ATLRQLDGIS GFPRRSESPY DTFGTAHSST SISAALGMAL GAKTQGENRV AIAVIGDGAM SAGMAFEAMN NAGVYRNLPL VVVLNDNDMS ISPPVGALNR YLARLMSGQF YAATKKGVEK LLSVAPPVLE FAKRFEEHAK GMLVPATMFE EFGFNYIGPI DGHDLESLVP TLQNIRQRAL EGGRPQFLHV VTKKGQGYKL AEADPILYHG PGKFNPQEGI KPAARPAKVS YTQVFGQWLC DMAAADKRLV GITPAMREGS GMVEFEQRFP DRYYDVGIAE QHAVTFAGGL ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ NLPVVFALDR AGLVGADGAT HAGAYDMAYL RCIPNMMVMA PADENECRQL LSTAFAQDCP TAVRYPRGAG TGVVVQPTLE PLPVGKAEVR RASTAPAGQR VVILAFGSMV APAAAAAERL DATVVNMRFV KPLDAACVLE MARTHDYVVT VEEGCVMGGA GSACLEALAA AGVATPVLQL GLPDRFVDHG DHAALLALCG LDANGILASI RERFAVQPRA VQPRVA
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