| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2215 |
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| Symbol | rpoD |
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| ID | 1221060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2399820 |
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| End bp | 2402087 |
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| Gene Length | 2268 bp |
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| Protein Length | 755 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637238614 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | NP_520336 |
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| Protein GI | 17546934 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGAAAT CGAAGATCAC CGAAGTCGAG AGCAAAGAGT CCGCTGCCAG CGCACGCGCA
GCCAAGACCG GTACCGCTCG TACCAGCACC GCAAAGCCGA ACAAGGCCGC GGATGCAGAC
ACCAAGCGCA CCGTTCGCGA GGCAGAGGCC ATCCCCACCC CAACTTCTCC TGCACCCCGC
GCCGAGGCCG CGGCCGAGCC CAAGAAGCGC GGCCGCAAGC CCCGTGCCGG GGCGCAGGCA
GACGACGAAA GCAGCACGGA CGTGACTGAA GAATTTGACG AAGCACCCGC CGCTCCGGCA
CCCAAATCCG ACAAGCAGAA GGCCCGCGAC CGCAAGGCCA AGGAAAAAGC CCTGCTGAAG
GAGTTTGCCG CAACGCAGCA AGGCGGGTCG GAAGAAGAGC TCGAGGCACG CCGCCAGAAG
CTCAAGGCGC TGATCAAGCT GGGCAAATCG CGCGGCTACC TGACCTACGC CGAAATCAAC
GACCATCTGC CCGACGACAT GGTCGACGCA GAGTCGATGG ACACGCTGGT CGCCACGCTC
AACGACATCG GCATCGCCGT GTACGAGCAG GCCCCGGACG CCGAGACCCT GCTGCTTAAC
GACAACGCGC CTTCCGTGAC CACGGAAGAA GAGGCGGAAG AGGAAGCCGA AGCCGCGCTG
TCCACGGTCG ACTCCGAATT CGGCCGCACG ACCGACCCGG TGCGCATGTA CATGCGCGAG
ATGGGCACGG TCGAGCTGCT CACCCGCGAA GGCGAAATCG AGATCGCCAA GCGCATCGAG
GCCGGCCTGA AGGACATGGT CATGGCCATC TCGGCCTGCC CGGTCACCAT CTCCGAGATC
CTCGCCATGG GCGAGCGCGT GGCCAACGAT GAGGCCAAGA TCGACGAGTA CATCGACGGC
CTGATCGACC CGAACGCCGA CGCCGCCGAA GCCGCGCAGG CCGGCGACGA GGACGAAGAC
TTCGAGGACG AAGACGCCGA CGAGAGCGGC GACGAAGAGG AAGACGAGGA CGACGACGGC
TCGGGCAGCT CGGCCGCATC CGCGCGCCAG CTCGAAGAGC TCAAGCAGGC CGCGCTGGCG
AAGTTCGCCA TCATCGGCGA CCAGTTCGAG AAGATGCGCC GCGCCTTCGA GAAGGAAGGC
TACAAGTCCA AGCCGTACCT GAAGGCGCAG GAAGCCATCC AGAACGAGCT GATGACGATC
CGCTTCACGG CACGCAATGT CGAGCGCCTG TGCGACACGC TGCGCGGCCA GGTCGACGAG
GTGCGCAAGC TCGAGCGCGC GATCCTGAAC ATCGTGGTCG ACAAGTGCGG CATGTCGCGT
GGCGATTTCG TCTCGCGTTT CCCTGGCAAC GAAACCAACC TCGGCTGGAT CAACACGGTG
GTCGCCGACG GCAAGCCGTA CAGCGCCATC GTCGAGCGCA ACATCCCGGC CGTGCACGAG
CTGCAGCAGA AGCTGATCGA CCTGCAGGCG CGCGTGGTGC TGCCGCTGGC CGAGCTCAAG
GACGTCAACA AGAAGATGTC CGAAGGCGAG CGCCGCGCCC GCGAGGCCAA GCGCGAGATG
ACCGAGGCCA ACCTCCGTCT GGTGATCTCC ATTGCCAAGA AGTACACCAA CCGCGGCCTG
CAGTTCCTCG ACCTGATCCA GGAAGGCAAC ATCGGCCTGA TGAAGGCGGT GGACAAGTTC
GAATACCGCC GCGGCTACAA GTTCTCGACG TACGCCACGT GGTGGATCCG CCAGGCCATC
ACGCGCTCGA TCGCCGACCA GGCGCGCACC ATCCGGATTC CGGTGCACAT GATCGAGACG
ATCAACAAGA TGAACCGCAT CTCGCGCCAG ATCCTGCAGG AAACCGGCAA CGAGCCGGAT
CCGGCGACGC TGGCCGAGAA GATGGAGATG CCGGAAGACA AGATCCGCAA GATCATGAAG
ATCGCCAAGG AGCCGATCTC CATGGAAACG CCGATCGGTG ACGACGACGA CTCCCATCTG
GGCGACTTCA TCGAGGACAC CAACACGCTG GCACCGGCCG AAGCGGCGCT GCATGGCTCC
ATGCGCGGCG TGGTGAAGGA CGTGCTCGAC TCGCTGACGC CGCGCGAAGC CAAGGTGCTG
CGCATGCGCT TCGGCATCGA GATGAGCACG GACCACACGC TGGAAGAGGT CGGCAAGCAG
TTCGACGTGA CCCGCGAGCG TATCCGCCAG ATCGAAGCGA AGGCGCTGCG CAAACTGCGC
CACCCGAGCC GTTCGGACAA GCTGAAGAGC TTCCTCGAGG GGAGCTGA
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| Protein sequence | MAKSKITEVE SKESAASARA AKTGTARTST AKPNKAADAD TKRTVREAEA IPTPTSPAPR
AEAAAEPKKR GRKPRAGAQA DDESSTDVTE EFDEAPAAPA PKSDKQKARD RKAKEKALLK
EFAATQQGGS EEELEARRQK LKALIKLGKS RGYLTYAEIN DHLPDDMVDA ESMDTLVATL
NDIGIAVYEQ APDAETLLLN DNAPSVTTEE EAEEEAEAAL STVDSEFGRT TDPVRMYMRE
MGTVELLTRE GEIEIAKRIE AGLKDMVMAI SACPVTISEI LAMGERVAND EAKIDEYIDG
LIDPNADAAE AAQAGDEDED FEDEDADESG DEEEDEDDDG SGSSAASARQ LEELKQAALA
KFAIIGDQFE KMRRAFEKEG YKSKPYLKAQ EAIQNELMTI RFTARNVERL CDTLRGQVDE
VRKLERAILN IVVDKCGMSR GDFVSRFPGN ETNLGWINTV VADGKPYSAI VERNIPAVHE
LQQKLIDLQA RVVLPLAELK DVNKKMSEGE RRAREAKREM TEANLRLVIS IAKKYTNRGL
QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET
INKMNRISRQ ILQETGNEPD PATLAEKMEM PEDKIRKIMK IAKEPISMET PIGDDDDSHL
GDFIEDTNTL APAEAALHGS MRGVVKDVLD SLTPREAKVL RMRFGIEMST DHTLEEVGKQ
FDVTRERIRQ IEAKALRKLR HPSRSDKLKS FLEGS
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