Gene RSc2143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2143 
Symbol 
ID1220985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2325503 
End bp2326456 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content63% 
IMG OID637238539 
Producttransmembrane ABC transporter protein 
Protein accessionNP_520264 
Protein GI17546862 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00783328 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCCCGA CCATGCGTCA CTTGCATCTT TCCTTTAGCC ACACGACGGC GGTCGGCAAG 
CCGGCATCGC CGTCCGCGCC ACGGCGGCGC GACGGCGCGA GCTGGCTCGT GTCGCCGTCC
GTCGCGGCGC TGCTGCTGTG GATGTCGATC CCGCTCGCGA TGACGATCTG GTTTTCGTTC
TCGCGATACA ACCTGCTGAA TCCGGACGTC AAGGGTTTCG CCGGATTCGA CAACTACCAT
TTCCTGGCGA CGGATCCGTC GTTCGGCCCA GCCATCTGGC ACACGCTCGC GTTGATCGGC
GCGGTGCTGG TGATCACCGT GGTCGGCGGC GTGCTGACGG CGGTGCTGTT CGATCGCAAG
TTCTACGGGC AGGGCATCGC GCGTTTGCTC ATGATCGCGC CGTTCTTCGT GATGCCGACG
GTGTCCGCGC TGATCTGGAA GAACATGATC CTGCATCCGG TATACGGGCT CGTCGCGAGC
GCGATGCGCG CGGTCGGGCT GACACCGATC GACTGGTTCG CCGATTATCC GCTGACCGCT
GTCGTGATCA TTGTCGCGTG GCAGTGGTTG CCGTTCGCGT TCCTGATCCT GTTCACCGCG
ATCCAGTCGC TCGACCAGGA GCAGAAGGAA GCGGCGCGCA TCGATGGCGC CGGGCCGATC
GCGATGTTCT TCTACATCAC GCTGCCGCAT CTGAAGCGCG CGATCGCGGT CGTGGTGATG
ATGGAGACGA TCTTCCTGCT GTCGATCTTC GCGGAGATCT ACACGACCAC GGGCGGTGGC
CCCGGCAACG CGACGACCAA CCTGTCGTAT CTGATCTATG CGCTCGGCCT GCAGCAGTTC
GACGTCGGGC TCGCCTCGGC GGGCGGGATC CTGGCTGTCG TGGTCGCGAA CATCGTGTCG
TTCTTCCTGG TGCGGATGCT CGCGAAGAAC CTGAAAGGGG AGTACCAGCA ATGA
 
Protein sequence
MVPTMRHLHL SFSHTTAVGK PASPSAPRRR DGASWLVSPS VAALLLWMSI PLAMTIWFSF 
SRYNLLNPDV KGFAGFDNYH FLATDPSFGP AIWHTLALIG AVLVITVVGG VLTAVLFDRK
FYGQGIARLL MIAPFFVMPT VSALIWKNMI LHPVYGLVAS AMRAVGLTPI DWFADYPLTA
VVIIVAWQWL PFAFLILFTA IQSLDQEQKE AARIDGAGPI AMFFYITLPH LKRAIAVVVM
METIFLLSIF AEIYTTTGGG PGNATTNLSY LIYALGLQQF DVGLASAGGI LAVVVANIVS
FFLVRMLAKN LKGEYQQ