| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2040 |
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| Symbol | |
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| ID | 1220880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2212860 |
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| End bp | 2214476 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637238434 |
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| Product | ABC transporter permease |
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| Protein accession | NP_520161 |
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| Protein GI | 17546759 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.552564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.308793 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATGA CACGCTTCCT CGCCGCACTG CTGTGCGCCC TCTGCCTGGT TGCCACGCCT
GCCGCATCGG CATGGGCGGC CGGACAACCG CTGACCCAGG CCGATCTCAA GCCGCTGGCC
GAAGACGACT TCGACGCCAA GGTGAAGGTG CTCAACGCCC TGGCCGCCGC GCCCGCCGAA
CAGGCCGGCC CCATCCTGCG GGCGTTGCAG AATGATGCGC TGTTCTATGC GCCCGCTGCC
GGCATGCTGC GCCAGGAGGG CGAGCGTTAT CTCGATGCGA TCAGCGGCCA GCCGGTTGCC
ATGAAGGCCG ATGACCTGCA AGCGCTGACG CTGAACAATG CCCTGCGCGC CCAGGTGGAC
AGCGCGGCCA GCGGCTTCGT GCTGCAGTCG CCCGACCGGG CCGTGCGCGC GCAGGCCATC
GATACGCTGC TGGCGCATCC CGAGACGGCA TCGCGCACGG TGGTCGATGC GGCGCGCAAG
CAGGAGACCG ATCCCGAACT GCGGACCCGC CTGCATCTGC TGTGGGCCAA CCTGGCGCTC
GACGACGGCT CGCCTGCCGA GAAGCTCGAA GCGCTCAGGC TGCTCGCCGG CGATACCAAC
CCGCAGACCC GCCAGCGCAT CGCGCCGCTG CTCGCCAAGG ACAGCGGCGC CGACGACGTG
CTGCGCGCCG CTGCCCGGCA GGCGCTGGAC AACCTTGCCG CGCAGGCGCG CAAGGCCGAG
CTGATCGGCA ACCTGTTCGC CGGCCTGAGC CTGGGCTCGG TGCTGTTGCT GGCCGCGCTG
GGGCTGGCGA TCACCTACGG CCTGATCGGC GTCATCAACA TGGCGCACGG TGAGTTCCTG
ATGATCGGCG CGTATGCCAC CTATGTGGTG CAGACGCTTT TTCGCAACCA TTTCCCTGCG
GCGTTCGACT GGTATCTGCC CGCCGCGCTG CCGGCCGCGT TCCTGGCCGC GGCCGTCGTC
GGCTTCGTGC TGGAGCGCAT GGTGCTGCGG CACCTGTACG GCCGGCCGCT GGAGACGCTG
CTCGCCACCT TCGGCGTCAG CCTGCTGCTG ATGCAGGCCG TGCGCAGCGT GTTCGGTGCG
CAGAACGTGG AGGTGGCCAA CCCGAGCTGG ATGAGCGGCG GCATCGCGCT GTATCCGGGG
CTGATCCTGC CGTATAACCG GCTGGTGATC CTGGCCTTCG CGCTGGTGGT GGTCACGCTG
GCGTGGGCGG TGCTCAACCG CACGCGGCTG GGCCTGTTCG TGCGCGCCAC CACGCAGAAC
CGCGCCATGG CGGCGTGCGT GGGCGTGCGG ACCTGGAAGG TGGACAGCTA CGCCTTCGCG
TTCGGCGCGG GCATCGCCGG CCTGGGCGGC TGCGCGCTGT CGCAGATCGG CAATGTGGGG
CCGGACCTCG GGCAGGGCTA CATCATCGAT TCCTTCATGG CGGTGGTGCT GGGCGGGGTG
GGGCAGCTGG CCGGCACCAT CGTCGGCGCG TTCGGGCTGG GGCTGATCAA CAAGTGCATC
GAGCCGTTCT ATGGCGCGGT GCTGGCGAAG ATCTTCGTGC TGGTGCTGAT CGTGCTGTTC
ATCCAGAAGC GTCCGCAGGG GCTGTTCGCC CTCAAGGGCC GCAGCGCGGA GGCCTGA
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| Protein sequence | MAMTRFLAAL LCALCLVATP AASAWAAGQP LTQADLKPLA EDDFDAKVKV LNALAAAPAE
QAGPILRALQ NDALFYAPAA GMLRQEGERY LDAISGQPVA MKADDLQALT LNNALRAQVD
SAASGFVLQS PDRAVRAQAI DTLLAHPETA SRTVVDAARK QETDPELRTR LHLLWANLAL
DDGSPAEKLE ALRLLAGDTN PQTRQRIAPL LAKDSGADDV LRAAARQALD NLAAQARKAE
LIGNLFAGLS LGSVLLLAAL GLAITYGLIG VINMAHGEFL MIGAYATYVV QTLFRNHFPA
AFDWYLPAAL PAAFLAAAVV GFVLERMVLR HLYGRPLETL LATFGVSLLL MQAVRSVFGA
QNVEVANPSW MSGGIALYPG LILPYNRLVI LAFALVVVTL AWAVLNRTRL GLFVRATTQN
RAMAACVGVR TWKVDSYAFA FGAGIAGLGG CALSQIGNVG PDLGQGYIID SFMAVVLGGV
GQLAGTIVGA FGLGLINKCI EPFYGAVLAK IFVLVLIVLF IQKRPQGLFA LKGRSAEA
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