| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2019 |
|---|
| Symbol | |
|---|
| ID | 1220859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2197582 |
|---|
| End bp | 2198082 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637238413 |
|---|
| Product | signal peptide protein |
|---|
| Protein accession | NP_520140 |
|---|
| Protein GI | 17546738 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.142293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.189866 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGGG CATCCGTGTT TGCCGTCGTG CCCGCCATGA CCTCCGCCGC CAACCTGACC
GTGCCGACCG TGCCCGCCGG CTTCGAGACG CTGGTCAAGC CCAGCCCCTT CCTGACGCTG
CTGGGGCCGG TGTACGCACG CGGCATCGGC CCGTCGAGGG TGATGGGTTT TCACGTGGGC
CATCATCACC TGAACCGGCG CGGCATCCTG CACGGCGGCG TGGTCGCCTC GCTGGCCGAT
GCGGCGCTCG GCTACTGCCT GGCCGACCCC GCCAGCGGCG ACGGCAGGGA CGGCGTGCTC
GCCATGTCGA CGGCGAGCCT GACGGTCGAC TTCATCGCCT CGGCGGGCGC GGGCGACTGG
ATCGAGATCA CCCCGCAGGG CCTGCGCACC GGCAGCAAGC TGGCCTTCGC GCAGGCCCTG
TTCCATCGCG GCGACCGGCT GGTCGCGCGC GCCAGCGCGG TGTTCGCCGT GCTCGGCGCT
CGCGTGGCCG GCCCGGTTTG A
|
|---|
| Protein sequence | MLRASVFAVV PAMTSAANLT VPTVPAGFET LVKPSPFLTL LGPVYARGIG PSRVMGFHVG
HHHLNRRGIL HGGVVASLAD AALGYCLADP ASGDGRDGVL AMSTASLTVD FIASAGAGDW
IEITPQGLRT GSKLAFAQAL FHRGDRLVAR ASAVFAVLGA RVAGPV
|
|---|
| |